当前解析结果
SmilChr07G001535| 统一新 Gene ID | SmilChr07G001535 |
|---|---|
| 名称 | SmilChr07G001535 |
| 描述 | kinesin-like protein KIN-4C |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 12450503 - 12458543 / + |
| NCBI Gene ID | LOC130992540 |
|---|---|
| GeneID | 130992540 |
| locus_tag | - |
| NCBI Name | LOC130992540 |
| 原始查询 | SmilChr07G001535 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-4C |
| 产物 | kinesin-like protein KIN-4C |
| Arabidopsis | AT5G60930 (AT5G60930)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836214] identity=58.7; qcov=1.03; evalue=0; confidence=high |
| Rice | Os09g0114500 (BC12)kinesin-like protein KIN-4A [Source:NCBI gene (formerly Entrezgene);Acc:4346402] identity=53.1; qcov=0.772; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0007052 (mitotic spindle organization); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd); PF25764 (KIF21A_4th) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992540 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057773194.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057773194.1 |
| 3 | Chromosome | 染色体 | 0.80000 | XP_057773194.1 |
| 4 | Phragmoplast | Phragmoplast | 0.80000 | XP_057773194.1 |
| 5 | Spindle pole | Spindle pole | 0.80000 | XP_057773194.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:12454865 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr7:12455017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B85,B90 |
Chr7:12455850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr7:12456229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr7:12457403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:12457752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773194.1PF16796
Microtub_bd 10-151 aa
PF00225
Kinesin 35-348 aa
PF25764
KIF21A_4th 517-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773194.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 10 | 151 | 1.1e-18 | 68.3 | Microtubule binding |
XP_057773194.1 |
Pfam | PF00225 |
Kinesin | Domain | 35 | 348 | 3.7e-104 | 349.0 | Kinesin motor domain |
XP_057773194.1 |
Pfam | PF25764 |
KIF21A_4th | Domain | 517 | 694 | 2.8e-57 | 194.1 | KIF21A-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。