Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001544`

染色体: Chr07 坐标: 12545199-12550407 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001544`
名称	SmilChr07G001544
描述	probable rhamnogalacturonate lyase B
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12545199 - 12550407 / `-`

ID 对照

NCBI Gene ID	`LOC130992571`
GeneID	`130992571`
locus_tag	`-`
NCBI Name	`LOC130992571`
原始查询	`SmilChr07G001544`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable rhamnogalacturonate lyase B
产物	probable rhamnogalacturonate lyase B
Arabidopsis	`AT1G09890` (AT1G09890) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=64.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=61.1; qcov=1.01; evalue=0; confidence=high
GO	GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:130992571

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057773240.1`
2	Vacuole	液泡	0.40000	`XP_057773240.1`
3	Cytoplasm	细胞质	0.20000	`XP_057773242.1`
4	Nucleus	细胞核	0.00000	`XP_057773240.1`
5	Chromosome	染色体	0.00000	`XP_057773240.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12546595`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B95,C77,C87
`Chr7:12546867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:12547109`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C83
`Chr7:12547109`	`C`	`CT`	1bp_insertion	CDS_variant	1	C83
`Chr7:12548575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C32,C68,C8
`Chr7:12548584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:12549367`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A8,B70,C21,C40,C55
`Chr7:12549367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B70,C21,C40,C55
`Chr7:12549419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:12549529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A9,B109,C60,C69
`Chr7:12549530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,C26,C27,C37
`Chr7:12550068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B118,B13,B65,C43,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773240.1

636 aa

318

636

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 6-203 aa PF14686 fn3_3 359-431 aa PF14683 CBM-like 445-633 aa

XP_057773241.1

635 aa

318

635

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 6-203 aa PF14686 fn3_3 359-431 aa PF14683 CBM-like 445-632 aa

XP_057773242.1

629 aa

314

629

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 6-203 aa PF14686 fn3_3 352-424 aa PF14683 CBM-like 438-626 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773240.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	6	203	9e-91	303.7	Rhamnogalacturonate lyase family
`XP_057773240.1`	Pfam	`PF14686`	fn3_3	Domain	359	431	2.1e-23	82.6	Polysaccharide lyase family 4, domain II
`XP_057773240.1`	Pfam	`PF14683`	CBM-like	Domain	445	633	3.2e-50	170.9	Polysaccharide lyase family 4, domain III
`XP_057773241.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	6	203	9e-91	303.7	Rhamnogalacturonate lyase family
`XP_057773241.1`	Pfam	`PF14686`	fn3_3	Domain	359	431	2e-23	82.6	Polysaccharide lyase family 4, domain II
`XP_057773241.1`	Pfam	`PF14683`	CBM-like	Domain	445	632	2.9e-50	171.0	Polysaccharide lyase family 4, domain III
`XP_057773242.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	6	203	8.6e-91	303.8	Rhamnogalacturonate lyase family
`XP_057773242.1`	Pfam	`PF14686`	fn3_3	Domain	352	424	2e-23	82.6	Polysaccharide lyase family 4, domain II
`XP_057773242.1`	Pfam	`PF14683`	CBM-like	Domain	438	626	3.3e-50	170.8	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057917257.1
AAATAACTCACAATATTTCATTTGTCTGCAGAGAATATATAAGAAGGATAAAACAATATGTCAACTACAAAACTACGGTTGCACATTCGAGAACGCTATGTGGTGATGGAAAATGCCATCGTTAGAGTCACATTATCAAAACCAGATGGCATTGTAACTGCAATAAAATACAATCACATGGACAATCTGCTGGAAACAGCCAACGATGAATCTAACAGAGGGTACTGGGACTTGGTTTGGAGTGAAGCAGGAAGTAGTGG...

XM_057917259.1
CACAATATTTCATTTGTCTGCAGAGAATATATAAGAAGGATAAAACAATATGTCAACTACAAAACTACGGTTGCACATTCGAGAACGCTATGTGGTGATGGAAAATGCCATCGTTAGAGTCACATTATCAAAACCAGATGGCATTGTAACTGCAATAAAATACAATCACATGGACAATCTGCTGGAAACAGCCAACGATGAATCTAACAGAGGGTACTGGGACTTGGTTTGGAGTGAAGCAGGAAGTAGTGGAACTACAG...

CDS

3 records

下载 CDS FASTA

LOC130992571
ATGTCAACTACAAAACTACGGTTGCACATTCGAGAACGCTATGTGGTGATGGAAAATGCCATCGTTAGAGTCACATTATCAAAACCAGATGGCATTGTAACTGCAATAAAATACAATCACATGGACAATCTGCTGGAAACAGCCAACGATGAATCTAACAGAGGGTACTGGGACTTGGTTTGGAGTGAAGCAGGAAGTAGTGGAACTACAGGGACATATGATAGAATTGCTGCAACAAATTTTGAAGTTGTGGTGGAAAC...

Protein

3 records

下载 Protein FASTA

XP_057773240.1
MSTTKLRLHIRERYVVMENAIVRVTLSKPDGIVTAIKYNHMDNLLETANDESNRGYWDLVWSEAGSSGTTGTYDRIAATNFEVVVETEEQIELSFSRKWDTSLQGKLAPLNIDKRFILLRDSSGFYSYAIYERLEGWPGFNLDETRIAFKLKKNKFRYMAMADNRRRYMPLPDDRLPGRGQALDYPEAVLLVDPIDPQFKGEVDDKYSYSGENEEVKVHGWISMDGGVGFWQIMASNEFRTGGSTKQDLTSHVGPTTLAM...

XP_057773241.1
MSTTKLRLHIRERYVVMENAIVRVTLSKPDGIVTAIKYNHMDNLLETANDESNRGYWDLVWSEAGSSGTTGTYDRIAATNFEVVVETEEQIELSFSRKWDTSLQGKLAPLNIDKRFILLRDSSGFYSYAIYERLEGWPGFNLDETRIAFKLKKNKFRYMAMADNRRRYMPLPDDRLPGRGQALDYPEAVLLVDPIDPQFKGEVDDKYSYSGENEEVKVHGWISMDGGVGFWQIMASNEFRTGGSTKQDLTSHVGPTTLAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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