Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001545`

染色体: Chr07 坐标: 12554923-12558238 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001545`
名称	SmilChr07G001545
描述	phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12554923 - 12558238 / `+`

ID 对照

NCBI Gene ID	`LOC130992626`
GeneID	`130992626`
locus_tag	`-`
NCBI Name	`LOC130992626`
原始查询	`SmilChr07G001545`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial-like
产物	phosphoribosylformylglycinamidine cyclo-ligase%2C chloroplastic/mitochondrial-like
Arabidopsis	`AT3G55010` (PUR5) phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) [Source:NCBI gene (formerly Entrezgene);Acc:824667] identity=77.8; qcov=0.896; evalue=0; confidence=high
Rice	`Os03g0831500` (OSJNBb0027B08.7) - identity=79.3; qcov=0.828; evalue=0; confidence=high
GO	GO:0004637 (phosphoribosylamine-glycine ligase activity); GO:0004641 (phosphoribosylformylglycinamidine cyclo-ligase activity); GO:0005829 (cytosol); GO:0006189 ('de novo' IMP biosynthetic process); GO:0046084 (adenine biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00586 (AIRS); PF02769 (AIRS_C)
InterPro	-
eggNOG	-
NR	GeneID:130992626

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773323.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057773323.1`
3	Nucleus	细胞核	0.00000	`XP_057773323.1`
4	Chromosome	染色体	0.00000	`XP_057773323.1`
5	Centromere	着丝粒	0.00000	`XP_057773323.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12555943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:12556088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C21,C55,C62
`Chr7:12556111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B58,C29
`Chr7:12556750`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C77
`Chr7:12556750`	`GC`	`G`	1bp_deletion	CDS_variant	1	C77
`Chr7:12557155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:12557218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:12557229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,B27,C26
`Chr7:12557232`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,B19,B95,C54,C78
`Chr7:12557616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B39,C39,C5
`Chr7:12557932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B27,B94,C53,D5
`Chr7:12557944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773323.1

396 aa

198

396

AIRS

AIRS_C

PF00586 AIRS 110-218 aa PF02769 AIRS_C 230-393 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773323.1`	Pfam	`PF00586`	AIRS	Domain	110	218	3.9e-24	85.9	AIR synthase related protein, N-terminal domain
`XP_057773323.1`	Pfam	`PF02769`	AIRS_C	Domain	230	393	4.6e-35	121.8	AIR synthase related protein, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917340.1
AAAGGAGCGAGAAAACTAAAATTTAAGAGCACTCGCAATCTCGCAAATCCTTACTTTAAAGTGGCATCCTCCTCTCTGCCGCGCCGACCGCCGCTTCTCTCCTCCACCGTCAACCTCAAAATCGTAACTTTTCAACTGGGTAACTGTTGGAAGCTATCAGTTGATCCGTAGAAGAAGCTCTTCAAATTTTCCGAGTTCCAGAGTTTGCATCCTCAATTCAAGAGTTTGGGAACACAACAGAAGATTCAAGAAAAGAAAAA...

CDS

1 records

下载 CDS FASTA

LOC130992626
ATGAATACTTCCTGCAAAGCAAATACAGAACTCTCCCGCTGTATCTCGAGTTCGATTAATCATAACTTGTTCAAGATTGGTAAAGACCATTCAACAAGAAGACTCTTGCCTTTCTTGTCCAAGAACTGCAAGAATGAAATTAAGATGAGAAGAGGAACTAGGAAAGGCAGAGGTGTGGTTTCTATGTCGAGAACTGAGGCTGCAGAAAAGAGCGATGGACTTACTTACAAGGATGCCGGAGTTGACATTGATGCTGGCTC...

Protein

1 records

下载 Protein FASTA

XP_057773323.1
MNTSCKANTELSRCISSSINHNLFKIGKDHSTRRLLPFLSKNCKNEIKMRRGTRKGRGVVSMSRTEAAEKSDGLTYKDAGVDIDAGSELVKRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIITSGAKPLFFLDYFATSRLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPDFYADGEYDLSGFAVGIVKKDSVIDGKNIEVGDVLIGLPSSGVHSNGFSLVRRVLERSGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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