Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001560`

染色体: Chr07 坐标: 12757359-12760360 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001560`
名称	SmilChr07G001560
描述	glutamyl-tRNA reductase 1, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	12757359 - 12760360 / `-`

ID 对照

NCBI Gene ID	`LOC130992581`
GeneID	`130992581`
locus_tag	`-`
NCBI Name	`LOC130992581`
原始查询	`SmilChr07G001560`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutamyl-tRNA reductase 1, chloroplastic-like
产物	glutamyl-tRNA reductase 1%2C chloroplastic-like
Arabidopsis	`AT1G58290` (HEMA1) Glutamyl-tRNA reductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842198] identity=77.5; qcov=1; evalue=0; confidence=high
Rice	`Os10g0502400` (HEMA1) - identity=75.6; qcov=0.846; evalue=0; confidence=high
GO	GO:0008883 (glutamyl-tRNA reductase activity); GO:0033014 (tetrapyrrole biosynthetic process); GO:0050661 (NADP binding)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00745 (GlutR_dimer); PF01488 (Shikimate_DH); PF03807 (F420_oxidored); PF05201 (GlutR_N)
InterPro	-
eggNOG	-
NR	GeneID:130992581

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773253.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057773253.1`
3	Nucleus	细胞核	0.00000	`XP_057773253.1`
4	Chromosome	染色体	0.00000	`XP_057773253.1`
5	Centromere	着丝粒	0.00000	`XP_057773253.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:12757597`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B51
`Chr7:12757597`	`GT`	`G`	1bp_deletion	CDS_variant	1	B51
`Chr7:12758186`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	A21
`Chr7:12758186`	`TAA`	`T`	2bp_deletion	CDS_variant	1	A21
`Chr7:12758211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:12758305`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B34
`Chr7:12758305`	`AC`	`A`	1bp_deletion	CDS_variant	1	B34
`Chr7:12758386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,A19,B138,C3,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773253.1

552 aa

276

552

GlutR_N

Shikimate_DH

F420_oxidored

GlutR_dimer

PF05201 GlutR_N 107-257 aa PF01488 Shikimate_DH 273-414 aa PF03807 F420_oxidored 290-355 aa PF00745 GlutR_dimer 428-532 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773253.1`	Pfam	`PF05201`	GlutR_N	Domain	107	257	6.9e-49	166.2	Glutamyl-tRNAGlu reductase, N-terminal domain
`XP_057773253.1`	Pfam	`PF01488`	Shikimate_DH	Family	273	414	5.2e-43	147.2	Shikimate / quinate 5-dehydrogenase
`XP_057773253.1`	Pfam	`PF03807`	F420_oxidored	Family	290	355	4.9e-06	27.8	NADP oxidoreductase coenzyme F420-dependent
`XP_057773253.1`	Pfam	`PF00745`	GlutR_dimer	Domain	428	532	8.4e-29	100.5	Glutamyl-tRNAGlu reductase, dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917270.1
AAAAAGATGGTAAATAGGAGTATGTGATATGTTGGTGGTGGTGGTAGCGATGAGAGGAAGTGAGTGTGGATAAAACACGCCCCTCATCAGCCAATCACAATTCAAAGAAATCCAACCAATACCACTCTTCCTCTCTCATCCAAATCAAAATCAAAATCATAATTAAACAAATAAAACTGCCAAAACAGGCATCCATTCAACCCCGAGGCATCAGCTCCCTCCTCATTTCTGGCCACATCGATCAAAACCCACCAAATCAC...

CDS

1 records

下载 CDS FASTA

LOC130992581
ATGGCTGTCTCGAGTGCATTTGTGGGTGCGAAGCTCGAAGCTTTACTGGTCAGCAATACGGCGTCGTCGTCGATGTCCGCCTCCGCTGCTCACGTCGGCTTGCCGGCTTCGGCTCGAGCCAGGCGACCGGCGTTGAGCAGGAGGAATTGGGGAGTGATCAGGTGCGAGGCTGCGCCGGACGCTCTGGCTCAAGCCGATGCGGCGGAACCGATCAATGCCGCTTCTTTCTCGGCTTCCGCTTCGAGCTTATCGGCTCTCGA...

Protein

1 records

下载 Protein FASTA

XP_057773253.1
MAVSSAFVGAKLEALLVSNTASSSMSASAAHVGLPASARARRPALSRRNWGVIRCEAAPDALAQADAAEPINAASFSASASSLSALEQLKTSAADRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAISELCGLNHIEEAAVLSTCNRMEIYVVALSRHRGVKEVTEWMSKTSGIPASEICEHRFLLYDQDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAITVGKRVRTETNIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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