Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001584`

染色体: Chr07 坐标: 13061187-13072853 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001584`
名称	SmilChr07G001584
描述	uncharacterized SmilChr07G001584
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	13061187 - 13072853 / `-`

ID 对照

NCBI Gene ID	`LOC130993107`
GeneID	`130993107`
locus_tag	`-`
NCBI Name	`LOC130993107`
原始查询	`SmilChr07G001584`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsCW-ZF6; symbol=OsCW-ZF6; hit=Os06g0622000; species=rice; confidence=high
产物	OsCW-ZF6; symbol=OsCW-ZF6; hit=Os06g0622000; species=rice; confidence=high
Arabidopsis	`AT4G36280` (CRH1) Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829785] identity=26.6; qcov=0.734; evalue=2.23e-24; confidence=low
Rice	`Os06g0622000` (OsCW-ZF6) - identity=49; qcov=1.03; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0008270 (zinc ion binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF07496 (zf-CW); PF13589 (HATPase_c_3); PF17942 (Morc6_S5)
InterPro	-
eggNOG	-
NR	GeneID:130993107

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773832.1`
2	Nucleoplasm	核质	0.40000	`XP_057773839.1`
3	Chromosome	染色体	0.00000	`XP_057773832.1`
4	Centromere	着丝粒	0.00000	`XP_057773832.1`
5	Chromatin	染色质	0.00000	`XP_057773832.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:13061723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:13062873`	`T`	`TA`	1bp_insertion	frameshift_variant	13	B122,B131,B25,B33,B34,B49,B5,B72,C2,C43,C84,C86,D11
`Chr7:13062948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr7:13063559`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B5
`Chr7:13063559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr7:13065350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:13066207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:13068585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B132
`Chr7:13068597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:13070154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr7:13070705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B52,B98,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773832.1

711 aa

356

711

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 211-340 aa PF17942 Morc6_S5 438-578 aa PF07496 zf-CW 600-642 aa

XP_057773833.1

711 aa

356

711

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 211-340 aa PF17942 Morc6_S5 438-578 aa PF07496 zf-CW 600-642 aa

XP_057773834.1

711 aa

356

711

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 211-340 aa PF17942 Morc6_S5 438-578 aa PF07496 zf-CW 600-642 aa

XP_057773835.1

700 aa

350

700

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 211-340 aa PF17942 Morc6_S5 438-578 aa PF07496 zf-CW 600-642 aa

XP_057773836.1

678 aa

339

678

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 178-307 aa PF17942 Morc6_S5 405-545 aa PF07496 zf-CW 567-609 aa

XP_057773837.1

678 aa

339

678

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 178-307 aa PF17942 Morc6_S5 405-545 aa PF07496 zf-CW 567-609 aa

XP_057773838.1

678 aa

339

678

HATPase_c_3

Morc6_S5

zf-CW

PF13589 HATPase_c_3 178-307 aa PF17942 Morc6_S5 405-545 aa PF07496 zf-CW 567-609 aa

XP_057773839.1

579 aa

290

579

HATPase_c_3

Morc6_S5

PF13589 HATPase_c_3 211-340 aa PF17942 Morc6_S5 438-573 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773832.1`	Pfam	`PF13589`	HATPase_c_3	Domain	211	340	1.8e-19	70.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773832.1`	Pfam	`PF17942`	Morc6_S5	Domain	438	578	1.3e-11	45.4	Morc6 ribosomal protein S5 domain 2-like
`XP_057773832.1`	Pfam	`PF07496`	zf-CW	Domain	600	642	6.6e-14	52.4	CW-type Zinc Finger
`XP_057773833.1`	Pfam	`PF13589`	HATPase_c_3	Domain	211	340	1.8e-19	70.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773833.1`	Pfam	`PF17942`	Morc6_S5	Domain	438	578	1.3e-11	45.4	Morc6 ribosomal protein S5 domain 2-like
`XP_057773833.1`	Pfam	`PF07496`	zf-CW	Domain	600	642	6.6e-14	52.4	CW-type Zinc Finger
`XP_057773834.1`	Pfam	`PF13589`	HATPase_c_3	Domain	211	340	1.8e-19	70.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773834.1`	Pfam	`PF17942`	Morc6_S5	Domain	438	578	1.3e-11	45.4	Morc6 ribosomal protein S5 domain 2-like
`XP_057773834.1`	Pfam	`PF07496`	zf-CW	Domain	600	642	6.6e-14	52.4	CW-type Zinc Finger
`XP_057773835.1`	Pfam	`PF13589`	HATPase_c_3	Domain	211	340	1.7e-19	70.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773835.1`	Pfam	`PF17942`	Morc6_S5	Domain	438	578	1.3e-11	45.5	Morc6 ribosomal protein S5 domain 2-like
`XP_057773835.1`	Pfam	`PF07496`	zf-CW	Domain	600	642	7e-14	52.3	CW-type Zinc Finger
`XP_057773836.1`	Pfam	`PF13589`	HATPase_c_3	Domain	178	307	1.6e-19	71.0	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773836.1`	Pfam	`PF17942`	Morc6_S5	Domain	405	545	1.2e-11	45.5	Morc6 ribosomal protein S5 domain 2-like
`XP_057773836.1`	Pfam	`PF07496`	zf-CW	Domain	567	609	6.7e-14	52.3	CW-type Zinc Finger
`XP_057773837.1`	Pfam	`PF13589`	HATPase_c_3	Domain	178	307	1.6e-19	71.0	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773837.1`	Pfam	`PF17942`	Morc6_S5	Domain	405	545	1.2e-11	45.5	Morc6 ribosomal protein S5 domain 2-like
`XP_057773837.1`	Pfam	`PF07496`	zf-CW	Domain	567	609	6.7e-14	52.3	CW-type Zinc Finger
`XP_057773838.1`	Pfam	`PF13589`	HATPase_c_3	Domain	178	307	1.6e-19	71.0	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773838.1`	Pfam	`PF17942`	Morc6_S5	Domain	405	545	1.2e-11	45.5	Morc6 ribosomal protein S5 domain 2-like
`XP_057773838.1`	Pfam	`PF07496`	zf-CW	Domain	567	609	6.7e-14	52.3	CW-type Zinc Finger
`XP_057773839.1`	Pfam	`PF13589`	HATPase_c_3	Domain	211	340	1.3e-19	71.3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057773839.1`	Pfam	`PF17942`	Morc6_S5	Domain	438	573	8.7e-11	42.8	Morc6 ribosomal protein S5 domain 2-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XR_009091580.1
ATGCATATCATTTAGGGGCATTTTTGTCTAATAAATAGCAGTTGTTTGGCGAAGCCACTGTGTAGTGTAATCTTGTTCTGTTTGCTAAATTTGAAGGTTGCTTCGCTGCTATATCAAACTTGGGGTTGTATGAATTCTACATGCGTCAAGCATGTCTTATGAAAGAACAAAGTATTAGAAACATAGTGATCTGAGTTGAGTTGTCTGCCAAAATTCGACCCTTGAAGACTCAAAATTGTACCAAAGGGAAAGCGTCAAGC...

XR_009091581.1
ATGCATATCATTTAGGGGCATTTTTGTCTAATAAATAGCAGTTGTTTGGCGAAGCCACTGTGTAGTGTAATCTTGTTCTGTTTGCTAAATTTGAAGGTTGCTTCGCTGCTATATCAAACTTGGGGTTGTATGAATTCTACATGCGTCAAGCATGTCTTATGAAAGAACAAAGTATTAGAAACATAGTGATCTGAGTTGAGTTGTCTGCCAAAATTCGACCCTTGAAGACTCAAAATTGTACCAAAGGGAAAGCGTCAAGC...

CDS

8 records

下载 CDS FASTA

LOC130993107
ATGTCTCCAGATTGTTCTGAGACACTTGTTAAACTGACAAAAGATGAAAAAATTATAAGTTGTGCAGCATGTGTTAATCCACCCAGTCAAATGCCTGGAGTTTTGGACATAACTTCCATTGTCAAGAGAGACACCGTCAGTTGTCTATCTACATTGCCTGGTTTTTCTATAATACCAGCCTGTGAAGATCCCCATCAGGAAAAAGAGTGGGGGAAGTTCCTGGATTTCCTTCAGAAGCATACAAGGGTCGCTATATCAAA...

Protein

8 records

下载 Protein FASTA

XP_057773832.1
MSPDCSETLVKLTKDEKIISCAACVNPPSQMPGVLDITSIVKRDTVSCLSTLPGFSIIPACEDPHQEKEWGKFLDFLQKHTRVAISKSKFGLYEFYILPPLENSKFDLVTVLYKGKASSISPGVADSEQISPPTSQAGESALSFSNLTRNKTSPEIQCAEVNGDYSCDLAAKTRSKLGNSDGMVKSFQRNYVTAHPSYLKTLGQAHSSWIFGAVAELVDNARDAKATKLEIAMNMFYSKIAGKEIPLLSFVDDGHGMSHA...

XP_057773833.1
MSPDCSETLVKLTKDEKIISCAACVNPPSQMPGVLDITSIVKRDTVSCLSTLPGFSIIPACEDPHQEKEWGKFLDFLQKHTRVAISKSKFGLYEFYILPPLENSKFDLVTVLYKGKASSISPGVADSEQISPPTSQAGESALSFSNLTRNKTSPEIQCAEVNGDYSCDLAAKTRSKLGNSDGMVKSFQRNYVTAHPSYLKTLGQAHSSWIFGAVAELVDNARDAKATKLEIAMNMFYSKIAGKEIPLLSFVDDGHGMSHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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