当前解析结果
SmilChr07G001601| 统一新 Gene ID | SmilChr07G001601 |
|---|---|
| 名称 | SmilChr07G001601 |
| 描述 | uncharacterized SmilChr07G001601 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 13369224 - 13370279 / + |
| NCBI Gene ID | LOC130993836 |
|---|---|
| GeneID | 130993836 |
| locus_tag | - |
| NCBI Name | LOC130993836 |
| 原始查询 | SmilChr07G001601 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=26; qcov=0.701; evalue=4.22e-22; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | PF14111 (DUF4283) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993836 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774856.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057774856.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774856.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774856.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774856.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:13369230 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C70,C9 |
Chr7:13369230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C70,C9 |
Chr7:13369266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B30,B43,B80,C35 |
Chr7:13369271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B59,C53,D1 |
Chr7:13369320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B15,B86,C10,D10 |
Chr7:13369330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B23,B88,C62,C80 |
Chr7:13369373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C8 |
Chr7:13369376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B129,B78,C33 |
Chr7:13369378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B23,B88,C62,C80 |
Chr7:13369390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B64,C18,C82 |
Chr7:13369419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B23,B88,C62,C80 |
Chr7:13369453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,C29,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774856.1PF14111
DUF4283 112-175 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774856.1 |
Pfam | PF14111 |
DUF4283 | Domain | 112 | 175 | 1.4e-07 | 31.8 | Domain of unknown function (DUF4283) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。