Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001610`

染色体: Chr07 坐标: 13483226-13491755 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001610`
名称	SmilChr07G001610
描述	70 kDa peptidyl-prolyl isomerase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	13483226 - 13491755 / `+`

ID 对照

NCBI Gene ID	`LOC130995316`
GeneID	`130995316`
locus_tag	`-`
NCBI Name	`LOC130995316`
原始查询	`SmilChr07G001610`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	70 kDa peptidyl-prolyl isomerase-like
产物	70 kDa peptidyl-prolyl isomerase-like
Arabidopsis	`AT3G25230` (ROF1) rotamase FKBP 1 [Source:NCBI gene (formerly Entrezgene);Acc:822117] identity=52.9; qcov=0.93; evalue=8.43e-162; confidence=high
Rice	`Os04g0352400` (OsFKBP62b) - identity=52.4; qcov=0.919; evalue=4.41e-161; confidence=high
GO	GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0005515 (protein binding)
KEGG	-
Pfam	PF00254 (FKBP_C)
InterPro	-
eggNOG	-
NR	GeneID:130995316

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776538.1`
2	Cytosol	细胞质基质	1.00000	`XP_057776542.1`
3	Cytoplasm	细胞质	1.00000	`XP_057776538.1`
4	Nucleoplasm	核质	0.20000	`XP_057776538.1`
5	Chromosome	染色体	0.00000	`XP_057776538.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:13485181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B54,C23,C35,C40,D9
`Chr7:13485399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,B10,B121,B26,C87
`Chr7:13485564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B127,B140,B29,B54
`Chr7:13485591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B25,C16
`Chr7:13487452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:13487453`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:13487468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B15,B86,C10
`Chr7:13487521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B53,B73,D11
`Chr7:13489453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B140,B29,B54,D11
`Chr7:13489898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:13489926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,B73,D11
`Chr7:13489943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B15,B86,C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776538.1

593 aa

296

593

FKBP_C

PF00254 FKBP_C 57-147 aa PF00254 FKBP_C 177-266 aa PF00254 FKBP_C 292-386 aa

XP_057776539.1

566 aa

283

566

FKBP_C

PF00254 FKBP_C 57-147 aa PF00254 FKBP_C 183-239 aa PF00254 FKBP_C 265-359 aa

XP_057776540.1

528 aa

264

528

FKBP_C

PF00254 FKBP_C 57-147 aa PF00254 FKBP_C 177-240 aa PF00254 FKBP_C 237-321 aa

XP_057776541.1

501 aa

250

501

FKBP_C

PF00254 FKBP_C 57-147 aa PF00254 FKBP_C 210-294 aa

XP_057776542.1

484 aa

242

484

FKBP_C

PF00254 FKBP_C 1-38 aa PF00254 FKBP_C 68-157 aa PF00254 FKBP_C 183-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776538.1`	Pfam	`PF00254`	FKBP_C	Domain	57	147	1.1e-61	205.9	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776538.1`	Pfam	`PF00254`	FKBP_C	Domain	177	266	1.1e-61	205.9	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776538.1`	Pfam	`PF00254`	FKBP_C	Domain	292	386	1.1e-61	205.9	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776539.1`	Pfam	`PF00254`	FKBP_C	Domain	57	147	2.4e-55	185.5	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776539.1`	Pfam	`PF00254`	FKBP_C	Domain	183	239	2.4e-55	185.5	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776539.1`	Pfam	`PF00254`	FKBP_C	Domain	265	359	2.4e-55	185.5	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776540.1`	Pfam	`PF00254`	FKBP_C	Domain	57	147	5.3e-52	174.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776540.1`	Pfam	`PF00254`	FKBP_C	Domain	177	240	5.3e-52	174.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776540.1`	Pfam	`PF00254`	FKBP_C	Domain	237	321	5.3e-52	174.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776541.1`	Pfam	`PF00254`	FKBP_C	Domain	57	147	1.1e-45	154.5	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776541.1`	Pfam	`PF00254`	FKBP_C	Domain	210	294	1.1e-45	154.5	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776542.1`	Pfam	`PF00254`	FKBP_C	Domain	1	38	1.3e-43	148.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776542.1`	Pfam	`PF00254`	FKBP_C	Domain	68	157	1.3e-43	148.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057776542.1`	Pfam	`PF00254`	FKBP_C	Domain	183	277	1.3e-43	148.0	FKBP-type peptidyl-prolyl cis-trans isomerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057920555.1
GAAATTTACTAGTAATAGTTAAAGTTATAAATAACTAAAAAAAAAGAAGAAGAAAGAAGACAAATGAAGTGTAAACTCAAAATCCCATTCTGGTATTTTGTCATTTTAAGAGCTTTTCCGCAGTGAATGGTGAAACAACATAAACTGCAGTGAACAGATTGCCACTCGGCCGATTCCAATCATACGCACTCGACATCAAAATCCAAAGTAAAACGGGGGAAATTCTAAAACCCTCATTTCAAACTTCACTTGAGAGAGAA...

XM_057920557.1
AAAGAAGAAGAAAGAAGACAAATGAAGTGTAAACTCAAAATCCCATTCTGGTATTTTGTCATTTTAAGAGCTTTTCCGCAGTGAATGGTGAAACAACATAAACTGCAGTGAACAGATTGCCACTCGGCCGATTCCAATCATACGCACTCGACATCAAAATCCAAAGTAAAACGGGGGAAATTCTAAAACCCTCATTTCAAACTTCACTTGAGAGAGAAGAGAAGCAGCATGGTGGAGTTCTCTAAAGCGAACATTAAAGA...

CDS

5 records

下载 CDS FASTA

LOC130995316
ATGGTGGAGTTCTCTAAAGCGAACATTAAAGACTTCGCAGAAGACGGCGACGACGAAGAAGAGCCGGGCGAAGAGGTCGAATCAGCGCCGCCGCTCAAAGTCGGCCAAGAGAGAGAAATTGGCTCCAAAGGGCTAAGGAAAAAGCTCTTAAAGAGGGGCGTTAATTGGGAGTCCCCTCAATTCGGTGATGAAGTTACATTTCACTATGTGGGAACTTTATGTGAGGATGGGAGCATTTTTGCGTCTACAAGGACAACGAA...

Protein

5 records

下载 Protein FASTA

XP_057776538.1
MVEFSKANIKDFAEDGDDEEEPGEEVESAPPLKVGQEREIGSKGLRKKLLKRGVNWESPQFGDEVTFHYVGTLCEDGSIFASTRTTNEPVTFKLGHDNIVKGLDHGIVTMRKGEIASFMLHPELAYGVSGTTGVPSNSIVQFEVELLSWITVVDICKDGGIIKKILETGEQIGPPGELDEVCVSYKAMLVDGTIVAETPEEGMEFYVEDGHFCPALTKALKTMKRGERANLIVQPKYAFGQKGNKLNNELPAIPPDSVLS...

XP_057776539.1
MVEFSKANIKDFAEDGDDEEEPGEEVESAPPLKVGQEREIGSKGLRKKLLKRGVNWESPQFGDEVTFHYVGTLCEDGSIFASTRTTNEPVTFKLGHDNIVKGLDHGIVTMRKGEIASFMLHPELAYGVSGTTGVPSNSIVQFEVELLSWITVVDICKDGGIIKKILETGEQIGPPGELDEVCGHFCPALTKALKTMKRGERANLIVQPKYAFGQKGNKLNNELPAIPPDSVLSIFVKLLSMKPVIDVTGDLKVKKKVLKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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