Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001611`

染色体: Chr07 坐标: 13492172-13515503 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001611`
名称	SmilChr07G001611
描述	calcium-transporting ATPase 3, endoplasmic reticulum-type
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	13492172 - 13515503 / `-`

ID 对照

NCBI Gene ID	`LOC130995317`
GeneID	`130995317`
locus_tag	`-`
NCBI Name	`LOC130995317`
原始查询	`SmilChr07G001611`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-transporting ATPase 3, endoplasmic reticulum-type
产物	calcium-transporting ATPase 3%2C endoplasmic reticulum-type
Arabidopsis	`AT1G10130` (ECA3) endoplasmic reticulum-type calcium-transporting ATPase 3 [Source:NCBI gene (formerly Entrezgene);Acc:837550] identity=82.6; qcov=0.994; evalue=0; confidence=high
Rice	`Os03g0730800` (OsECA2) - identity=82.1; qcov=0.624; evalue=0; confidence=high
GO	GO:0005388 (P-type calcium transporter activity); GO:0005524 (ATP binding); GO:0006874 (intracellular calcium ion homeostasis); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0070588 (calcium ion transmembrane transport)
KEGG	smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF08282 (Hydrolase_3); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:130995317

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057776543.1`
2	Vacuole membrane	液泡膜	0.60000	`XP_057776543.1`
3	Cell membrane	细胞膜	0.20000	`XP_057776543.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057776543.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057776543.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:13493848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:13498448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B48,C61
`Chr7:13499774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:13501700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B1,B103,B72,B78
`Chr7:13501703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B138,B31,B84
`Chr7:13501798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B89,D11,D4
`Chr7:13502913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B69,C23,C46,D11
`Chr7:13503675`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B50
`Chr7:13503675`	`TA`	`T`	1bp_deletion	CDS_variant	1	B50
`Chr7:13503688`	`GC`	`G`	1bp_deletion	frameshift_variant	144	A1,A10,A11,A14,A15,A18,A19,A21,A22,A23,A24,A25,A4,A6,A7,B102,B103,B105,B108,B111,B112,B114,B12,B120,B121,B124,B126,B127,B128,B129,B13,B130,B132,B134,B135,B136,B137,B139,B15,B16,B18,B2,B20,B22,B24,B25,B26,B28,B3,B31,B32,B35,B36,B38,B39,B4,B40,B44,B45,B46,B47,B48,B5,B51,B53,B54,B55,B56,B59,B62,B64,B65,B66,B69,B7,B70,B71,B72,B73,B74,B75,B78,B8,B81,B82,B83,B84,B88,B89,B91,B94,B96,B99,C1,C11,C13,C14,C16,C17,C19,C2,C23,C24,C26,C28,C29,C32,C33,C34,C4,C41,C42,C46,C47,C48,C49,C54,C58,C59,C62,C64,C66,C67,C68,C69,C70,C74,C75,C76,C77,C79,C81,C82,C86,C87,D1,D10,D11,D3,D4,D5,D6,D7,D8
`Chr7:13504234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:13505881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B7,B93,C16,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776543.1

1002 aa

501

1002

Cation_ATPase_N

E1-E2_ATPase

Cation_ATPase

Hydrolase

Hydrolase_3

Cation_ATPase_C

PF00690 Cation_ATPase_N 5-72 aa PF00122 E1-E2_ATPase 122-236 aa PF13246 Cation_ATPase 410-597 aa PF00702 Hydrolase 581-706 aa PF08282 Hydrolase_3 678-732 aa PF00689 Cation_ATPase_C 777-975 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776543.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	5	72	2.1e-20	72.8	Cation transporter/ATPase, N-terminus
`XP_057776543.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	122	236	3.8e-24	85.1	P-type ATPase actuator domain
`XP_057776543.1`	Pfam	`PF13246`	Cation_ATPase	Family	410	597	2.5e-43	148.7	P-type ATPase, cytoplasmic domain N
`XP_057776543.1`	Pfam	`PF00702`	Hydrolase	Domain	581	706	3.3e-16	60.9	haloacid dehalogenase-like hydrolase
`XP_057776543.1`	Pfam	`PF08282`	Hydrolase_3	Domain	678	732	9.5e-08	32.8	haloacid dehalogenase-like hydrolase
`XP_057776543.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	777	975	5e-47	160.7	Cation transporting ATPase, C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920560.1
ATTCGAAAAAAATACAAAATAAAATAACTGAAAAAGGGAGCAGCATTTCACATTTTCAGAGCAGGAATAGATTACCGGAAACGTGAGATCTGATGGAGACCGCGCCACAAGCACTAGTGCACTAACTCTCACGTTAATTAACGCAGTGCACTCTCCACTTCACTACTCCTCGGTGGAAAGGTCGATCTCTCAATAACCATATTTTAGTAGTAGTTTCAAGAAATATTGGAGCAACAATGGAAGATGCCTACGCCAGATCA...

CDS

1 records

下载 CDS FASTA

LOC130995317
ATGGAAGATGCCTACGCCAGATCAGCCAGCGAGGTTTTGGAATTCTTTTCCGTGGACCCAACCAGAGGCTTGACGGATTTCCAGGTTGCAGAGCATGGTAGATCATACGGGAAAAATGTGCTACCTCAAGAAAAAAGCACTCCTTTTTGGCGACTGGTGCTGAAACAATTTGACGATTTACTTGTGAAGATACTGATTGTAGCGGCCATAGTCTCCTTCCTTTTGGCCTTGGCTAATGGAGAGACAGGGTTATCTGCCTT...

Protein

1 records

下载 Protein FASTA

XP_057776543.1
MEDAYARSASEVLEFFSVDPTRGLTDFQVAEHGRSYGKNVLPQEKSTPFWRLVLKQFDDLLVKILIVAAIVSFLLALANGETGLSAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPAPDLVPGDIVEVSVGCKIPADMRMIEMLSDQLRVDQAILTGESCSVEKELDATNVINAVYQDKTNILFSGTVVVSGRARAVVVGVGSNTAMGNIRDSMLNTEDEATPLKKKLDEFGTFLAKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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