Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001638`

染色体: Chr07 坐标: 13817564-13822250 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001638`
名称	SmilChr07G001638
描述	LEC14B protein-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	13817564 - 13822250 / `+`

ID 对照

NCBI Gene ID	`LOC130995342`
GeneID	`130995342`
locus_tag	`-`
NCBI Name	`LOC130995342`
原始查询	`SmilChr07G001638`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEC14B protein-like
产物	LEC14B protein-like
Arabidopsis	`AT4G03020` (AT4G03020) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:828111] identity=68.3; qcov=0.958; evalue=0; confidence=high
Rice	`Os05g0407200` (OsWD40-119) - identity=60.6; qcov=0.908; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0080008 (Cul4-RING E3 ubiquitin ligase complex)
KEGG	-
Pfam	PF00400 (WD40); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:130995342

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776573.1`
2	Cytoplasm	细胞质	0.80000	`XP_057776573.1`
3	Chromosome	染色体	0.00000	`XP_057776573.1`
4	Centromere	着丝粒	0.00000	`XP_057776573.1`
5	Chromatin	染色质	0.00000	`XP_057776573.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:13818975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr7:13820182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr7:13820513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C65
`Chr7:13821891`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B2
`Chr7:13821891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776573.1

500 aa

250

500

Beta-prop_NOL10_N

WD40

PF23098 Beta-prop_NOL10_N 142-299 aa PF00400 WD40 224-253 aa PF00400 WD40 262-296 aa PF00400 WD40 304-342 aa PF00400 WD40 382-424 aa PF00400 WD40 429-465 aa

XP_057776574.1

500 aa

250

500

Beta-prop_NOL10_N

WD40

PF23098 Beta-prop_NOL10_N 142-299 aa PF00400 WD40 224-253 aa PF00400 WD40 262-296 aa PF00400 WD40 304-342 aa PF00400 WD40 382-424 aa PF00400 WD40 429-465 aa

XP_057776575.1

500 aa

250

500

Beta-prop_NOL10_N

WD40

PF23098 Beta-prop_NOL10_N 142-299 aa PF00400 WD40 224-253 aa PF00400 WD40 262-296 aa PF00400 WD40 304-342 aa PF00400 WD40 382-424 aa PF00400 WD40 429-465 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776573.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	142	299	3.2e-10	40.4	Nucleolar protein 10-like, N-terminal domain
`XP_057776573.1`	Pfam	`PF00400`	WD40	Repeat	224	253	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776573.1`	Pfam	`PF00400`	WD40	Repeat	262	296	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776573.1`	Pfam	`PF00400`	WD40	Repeat	304	342	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776573.1`	Pfam	`PF00400`	WD40	Repeat	382	424	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776573.1`	Pfam	`PF00400`	WD40	Repeat	429	465	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776574.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	142	299	3.2e-10	40.4	Nucleolar protein 10-like, N-terminal domain
`XP_057776574.1`	Pfam	`PF00400`	WD40	Repeat	224	253	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776574.1`	Pfam	`PF00400`	WD40	Repeat	262	296	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776574.1`	Pfam	`PF00400`	WD40	Repeat	304	342	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776574.1`	Pfam	`PF00400`	WD40	Repeat	382	424	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776574.1`	Pfam	`PF00400`	WD40	Repeat	429	465	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776575.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	142	299	3.2e-10	40.4	Nucleolar protein 10-like, N-terminal domain
`XP_057776575.1`	Pfam	`PF00400`	WD40	Repeat	224	253	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776575.1`	Pfam	`PF00400`	WD40	Repeat	262	296	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776575.1`	Pfam	`PF00400`	WD40	Repeat	304	342	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776575.1`	Pfam	`PF00400`	WD40	Repeat	382	424	5.2e-31	106.5	WD domain, G-beta repeat
`XP_057776575.1`	Pfam	`PF00400`	WD40	Repeat	429	465	5.2e-31	106.5	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920592.1
ATAAGGTTTGAGGTATTCATTGAATTATTTTTCTCATTCCCCCAAAATTTAGAAATCTATTATAGAAAAATGAATTCTTCTGCCGTCACCAGCCAAGAGTATCTAAGTAGGTAACGCCGGTCGTCACAATGTTGCCTGTACCTGAAGATGCAGACACTGATAGCATGATAGGCTATAGATTTAGTAAAATGGAGATTGAATCTGAGCTCTCTGATGGCTCAAGTGATGATGGTGGTGGCAGTTCTTGGCCTAGTCAAAAG...

XM_057920590.1
AGTAAGTGGTTAGTGAGACAAAGTTTAAAAAAGTCAAATATTTCTTGTTCCTCTTCCTCTTCATCTTTATATTTTCTGTTTGAGATAGTACACCATTTTTCTTATATATCGTGAAATGAGGATTCTTGATTTTCTGGGATGTTTTAATTCTAGGCAGTTCTTTTTGAGGCAGCTGTAAGAAATCAAACACGCAAGTTTCCCTGATTATATATGTGTATCAGTGTATGTATATATTCAGCGATTGCAAGTGGTATATTGTT...

CDS

3 records

下载 CDS FASTA

LOC130995342
ATGTTGCCTGTACCTGAAGATGCAGACACTGATAGCATGATAGGCTATAGATTTAGTAAAATGGAGATTGAATCTGAGCTCTCTGATGGCTCAAGTGATGATGGTGGTGGCAGTTCTTGGCCTAGTCAAAAGCCAGATTCATTAGATCAAGATATAGCTCAGCTAACGAAGCTTCAGTCGAGGCCAAATGAGCATTTCAGCAGCGTTTCACCTAGGAAACACGACTTCCCTATCTCTACTTTGAAGATGTTGGCAGGTCG...

Protein

3 records

下载 Protein FASTA

XP_057776573.1
MLPVPEDADTDSMIGYRFSKMEIESELSDGSSDDGGGSSWPSQKPDSLDQDIAQLTKLQSRPNEHFSSVSPRKHDFPISTLKMLAGREANLSGRGRFSLADCRHVLSRYLPVYGPYIVDQMSTRAYVSQFSADGSLLIAAFQGSQIRIYDVEKGWKVRKNILARSLRWTITDTSLSPDQRWLVYASMSPVIQIVDAGSHTCESLANITEVHDGLDLSSHDDGGYSFGIFSLQFSTDGQEVVAGSSDGDIHVCDLNTKKVS...

XP_057776574.1
MLPVPEDADTDSMIGYRFSKMEIESELSDGSSDDGGGSSWPSQKPDSLDQDIAQLTKLQSRPNEHFSSVSPRKHDFPISTLKMLAGREANLSGRGRFSLADCRHVLSRYLPVYGPYIVDQMSTRAYVSQFSADGSLLIAAFQGSQIRIYDVEKGWKVRKNILARSLRWTITDTSLSPDQRWLVYASMSPVIQIVDAGSHTCESLANITEVHDGLDLSSHDDGGYSFGIFSLQFSTDGQEVVAGSSDGDIHVCDLNTKKVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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