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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001669

染色体: Chr07 坐标: 14156576-14162828 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001669
名称SmilChr07G001669
描述caffeoylshikimate esterase-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向14156576 - 14162828 / -

ID 对照

NCBI Gene IDLOC130995368
GeneID130995368
locus_tag-
NCBI NameLOC130995368
原始查询SmilChr07G001669

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述caffeoylshikimate esterase-like
产物caffeoylshikimate esterase-like
ArabidopsisAT3G62860 (AT3G62860)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825461]
identity=67.5; qcov=0.909; evalue=6.79e-147; confidence=high
RiceOs05g0363100
-
identity=62.7; qcov=0.943; evalue=3.93e-140; confidence=high
GOGO:0016020 (membrane); GO:0016298 (lipase activity)
KEGGsmil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro-
eggNOG-
NRGeneID:130995368

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.60000 XP_057776613.1
2 Lipid droplet 脂滴 0.40000 XP_057776613.1
3 Cytosol 细胞质基质 0.20000 XP_057776613.1
4 Nucleus 细胞核 0.00000 XP_057776613.1
5 Chromosome 染色体 0.00000 XP_057776613.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:14157038 C T EMS_canonical_SNV CDS_variant 3 A13,B114,C30
Chr7:14157049 G A EMS_canonical_SNV CDS_variant 1 C6
Chr7:14157096 G A EMS_canonical_SNV CDS_variant 4 A18,B75,C6,C61
Chr7:14157099 G A EMS_canonical_SNV CDS_variant 1 C6
Chr7:14157972 TCA T 2bp_deletion frameshift_variant 31 A13,A22,B101,B122,B131,B134,B136,B32,B34,B41,B48,B59,B67,B76,B80,B84,B94,C1,C10,C19,C20,C35,C41,C43,C54,C68,C69,C71,C80,D6,D9
Chr7:14157986 TAG T 2bp_deletion frameshift_variant 30 A13,A22,B122,B131,B134,B32,B34,B41,B48,B59,B67,B76,B79,B80,B86,B94,C1,C10,C19,C35,C41,C43,C54,C56,C68,C69,C73,D6,D7,D9
Chr7:14157989 C CTT 2bp_insertion frameshift_variant 30 A13,A22,B122,B131,B134,B19,B32,B34,B41,B48,B59,B76,B79,B80,B86,B94,C1,C10,C19,C35,C41,C43,C54,C56,C68,C69,C73,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776613.1
351 aa
N
1
176
351
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
C
PF12146 Hydrolase_4 28-270 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-261 aa
XP_057776614.1
351 aa
N
1
176
351
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
C
PF12146 Hydrolase_4 28-270 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-261 aa
XP_057776615.1
351 aa
N
1
176
351
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
C
PF12146 Hydrolase_4 28-270 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-261 aa
XP_057776616.1
351 aa
N
1
176
351
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
C
PF12146 Hydrolase_4 28-270 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-261 aa
XP_057776617.1
318 aa
N
1
159
318
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
Peptidase_S9
Hydrolase_4
C
PF12146 Hydrolase_4 28-186 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-158 aa PF00326 Peptidase_S9 54-257 aa PF12146 Hydrolase_4 186-237 aa
XP_057776618.1
318 aa
N
1
159
318
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
Peptidase_S9
Hydrolase_4
C
PF12146 Hydrolase_4 28-186 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-158 aa PF00326 Peptidase_S9 54-257 aa PF12146 Hydrolase_4 186-237 aa
XP_057776619.1
318 aa
N
1
159
318
Hydrolase_4
Abhydrolase_1
Abhydrolase_6
Peptidase_S9
Hydrolase_4
C
PF12146 Hydrolase_4 28-186 aa PF00561 Abhydrolase_1 32-142 aa PF12697 Abhydrolase_6 33-158 aa PF00326 Peptidase_S9 54-257 aa PF12146 Hydrolase_4 186-237 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776613.1 Pfam PF12146 Hydrolase_4 Domain 28 270 5.9e-65 219.6 Serine aminopeptidase, S33
XP_057776613.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 2e-13 51.3 alpha/beta hydrolase fold
XP_057776613.1 Pfam PF12697 Abhydrolase_6 Domain 33 261 1.4e-08 36.4 Alpha/beta hydrolase family
XP_057776614.1 Pfam PF12146 Hydrolase_4 Domain 28 270 5.9e-65 219.6 Serine aminopeptidase, S33
XP_057776614.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 2e-13 51.3 alpha/beta hydrolase fold
XP_057776614.1 Pfam PF12697 Abhydrolase_6 Domain 33 261 1.4e-08 36.4 Alpha/beta hydrolase family
XP_057776615.1 Pfam PF12146 Hydrolase_4 Domain 28 270 5.9e-65 219.6 Serine aminopeptidase, S33
XP_057776615.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 2e-13 51.3 alpha/beta hydrolase fold
XP_057776615.1 Pfam PF12697 Abhydrolase_6 Domain 33 261 1.4e-08 36.4 Alpha/beta hydrolase family
XP_057776616.1 Pfam PF12146 Hydrolase_4 Domain 28 270 5.9e-65 219.6 Serine aminopeptidase, S33
XP_057776616.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 2e-13 51.3 alpha/beta hydrolase fold
XP_057776616.1 Pfam PF12697 Abhydrolase_6 Domain 33 261 1.4e-08 36.4 Alpha/beta hydrolase family
XP_057776617.1 Pfam PF12146 Hydrolase_4 Domain 28 186 2.7e-53 181.5 Serine aminopeptidase, S33
XP_057776617.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 3.5e-13 50.5 alpha/beta hydrolase fold
XP_057776617.1 Pfam PF12697 Abhydrolase_6 Domain 33 158 1.9e-07 32.6 Alpha/beta hydrolase family
XP_057776617.1 Pfam PF00326 Peptidase_S9 Domain 54 257 1e-10 42.2 Prolyl oligopeptidase family
XP_057776617.1 Pfam PF12146 Hydrolase_4 Domain 186 237 2.7e-53 181.5 Serine aminopeptidase, S33
XP_057776618.1 Pfam PF12146 Hydrolase_4 Domain 28 186 2.7e-53 181.5 Serine aminopeptidase, S33
XP_057776618.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 3.5e-13 50.5 alpha/beta hydrolase fold
XP_057776618.1 Pfam PF12697 Abhydrolase_6 Domain 33 158 1.9e-07 32.6 Alpha/beta hydrolase family
XP_057776618.1 Pfam PF00326 Peptidase_S9 Domain 54 257 1e-10 42.2 Prolyl oligopeptidase family
XP_057776618.1 Pfam PF12146 Hydrolase_4 Domain 186 237 2.7e-53 181.5 Serine aminopeptidase, S33
XP_057776619.1 Pfam PF12146 Hydrolase_4 Domain 28 186 2.7e-53 181.5 Serine aminopeptidase, S33
XP_057776619.1 Pfam PF00561 Abhydrolase_1 Domain 32 142 3.5e-13 50.5 alpha/beta hydrolase fold
XP_057776619.1 Pfam PF12697 Abhydrolase_6 Domain 33 158 1.9e-07 32.6 Alpha/beta hydrolase family
XP_057776619.1 Pfam PF00326 Peptidase_S9 Domain 54 257 1e-10 42.2 Prolyl oligopeptidase family
XP_057776619.1 Pfam PF12146 Hydrolase_4 Domain 186 237 2.7e-53 181.5 Serine aminopeptidase, S33

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057920632.1
AATAAACAAATAGTTTAATTGTATGAAAGTGATTGATCCACGCCTCCACCAAAGTTATCCAAATTCTTCACATTTTCCAAAACGTCCATAACTTAACTTCCCCAAAGTTATCCAAATTCTTCACATTTTCCAGTCTCAATTTTCATGTGAACAGCTCCACATTTTCATCAATTCTAAGCTCGGCATCCAGTTCATAATTTCCTCCCTCAGTTGAATAACATCAAAATCCTGTTACAAGACAAAGGTTTGATCTTTTTGCG...
XM_057920635.1
ATCCACGCCTCCACCAAAGTTATCCAAATTCTTCACATTTTCCAAAACGTCCATAACTTAACTTCCCCAAAGTTATCCAAATTCTTCACATTTTCCAGTCTCAATTTTCATGTGAACAGCTCCACATTTTCATCAATTCTAAGCTCGGCATCCAGTTCATAATTTCCTCCCTCAGTTGAATAACATCAAAATCCTGTTACAAGACAAAGGACTTCGCTTTTTTTCGTCAAGGAATGATTGTGTTTTGATTCTGGGTCTCA...

CDS

7 records

下载 CDS FASTA
LOC130995368
ATGGATGTTGTATATTGTGAGGAGTATATAACGAATTCTAGAGGCGTGGAGCTCTTTACTTGCAGATGGTTGCCCATTTCTTCTCCAAAAGCTTTGGTTTTTCTCTGCCATGGTTATGGCATGGAATGCAGTAACTTCATGAAAGGTGTTGGGATTAAACTGTCGAATCATGGCTATGCTGTGTTTGGAATTGATTATGAAGGCCATGGACAGTCCTCAGGTGCTCGATGTTACATCAAGAGGTTCGACAATATTGTCAA...
LOC130995368
ATGGATGTTGTATATTGTGAGGAGTATATAACGAATTCTAGAGGCGTGGAGCTCTTTACTTGCAGATGGTTGCCCATTTCTTCTCCAAAAGCTTTGGTTTTTCTCTGCCATGGTTATGGCATGGAATGCAGTAACTTCATGAAAGGTGTTGGGATTAAACTGTCGAATCATGGCTATGCTGTGTTTGGAATTGATTATGAAGGCCATGGACAGTCCTCAGGTGCTCGATGTTACATCAAGAGGTTCGACAATATTGTCAA...

Protein

7 records

下载 Protein FASTA
XP_057776613.1
MDVVYCEEYITNSRGVELFTCRWLPISSPKALVFLCHGYGMECSNFMKGVGIKLSNHGYAVFGIDYEGHGQSSGARCYIKRFDNIVNDCSEHFKSVCAREEYKEKRRFLYGESMGGAVALLTHKNDPNFWDGAVLVAPMCKISEKVKPHPIIISLLTRVEDVIPKWKIVPTKDVIDSAFKDPVKREEIRGNKLIYQEKPRLKTALELLRTSMNLEDSLNEVTLPFLVLHGEADTVTDPEVSKGLYEQASSVDKTMKIYAG...
XP_057776614.1
MDVVYCEEYITNSRGVELFTCRWLPISSPKALVFLCHGYGMECSNFMKGVGIKLSNHGYAVFGIDYEGHGQSSGARCYIKRFDNIVNDCSEHFKSVCAREEYKEKRRFLYGESMGGAVALLTHKNDPNFWDGAVLVAPMCKISEKVKPHPIIISLLTRVEDVIPKWKIVPTKDVIDSAFKDPVKREEIRGNKLIYQEKPRLKTALELLRTSMNLEDSLNEVTLPFLVLHGEADTVTDPEVSKGLYEQASSVDKTMKIYAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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