当前解析结果
SmilChr07G001680| 统一新 Gene ID | SmilChr07G001680 |
|---|---|
| 名称 | SmilChr07G001680 |
| 描述 | glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14231874 - 14239789 / - |
| NCBI Gene ID | LOC130995376 |
|---|---|
| GeneID | 130995376 |
| locus_tag | - |
| NCBI Name | LOC130995376 |
| 原始查询 | SmilChr07G001680 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like |
| 产物 | glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like |
| Arabidopsis | AT3G06860 (MFP2)multifunctional protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:819870] identity=51.63; qcov=0.947; evalue=0.0; confidence=high |
| Rice | Os01g0348600- identity=52.34; qcov=0.945; evalue=0.0; confidence=high |
| GO | GO:0003857 ((3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity); GO:0005777 (peroxisome); GO:0006635 (fatty acid beta-oxidation); GO:0070403 (NAD+ binding) |
| KEGG | smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00378 (ECH_1); PF00725 (3HCDH); PF02737 (3HCDH_N); PF16113 (ECH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995376 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.80000 | XP_057776628.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057776627.1 |
| 3 | Mitochondrion | 线粒体 | 0.40000 | XP_057776628.1 |
| 4 | Chloroplast | 叶绿体 | 0.40000 | XP_057776628.1 |
| 5 | Cytoplasm | 细胞质 | 0.20000 | XP_057776627.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14233222 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B7 |
Chr7:14233222 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B7 |
Chr7:14233252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr7:14233402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B106,B26,B36,C45 |
Chr7:14233799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B14,C77 |
Chr7:14234488 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | A18 |
Chr7:14234488 |
GT |
G |
1bp_deletion | CDS_variant | 1 | A18 |
Chr7:14234591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,C77 |
Chr7:14234883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B109,B35,B59,D3 |
Chr7:14235658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B59 |
Chr7:14235739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B109,B35,D3 |
Chr7:14236615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776627.1PF00378
ECH_1 12-204 aa
PF16113
ECH_2 16-194 aa
PF02737
3HCDH_N 306-485 aa
PF00725
3HCDH 490-580 aa
XP_057776628.1PF00378
ECH_1 12-204 aa
PF16113
ECH_2 16-194 aa
PF02737
3HCDH_N 306-485 aa
PF00725
3HCDH 490-580 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776627.1 |
Pfam | PF00378 |
ECH_1 | Domain | 12 | 204 | 4.2e-34 | 118.7 | Enoyl-CoA hydratase/isomerase |
XP_057776627.1 |
Pfam | PF16113 |
ECH_2 | Domain | 16 | 194 | 2.2e-20 | 74.2 | Enoyl-CoA hydratase/isomerase |
XP_057776627.1 |
Pfam | PF02737 |
3HCDH_N | Domain | 306 | 485 | 2.4e-44 | 152.1 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
XP_057776627.1 |
Pfam | PF00725 |
3HCDH | Domain | 490 | 580 | 1e-17 | 65.1 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
XP_057776628.1 |
Pfam | PF00378 |
ECH_1 | Domain | 12 | 204 | 4e-34 | 118.8 | Enoyl-CoA hydratase/isomerase |
XP_057776628.1 |
Pfam | PF16113 |
ECH_2 | Domain | 16 | 194 | 2.1e-20 | 74.3 | Enoyl-CoA hydratase/isomerase |
XP_057776628.1 |
Pfam | PF02737 |
3HCDH_N | Domain | 306 | 485 | 2.2e-44 | 152.2 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
XP_057776628.1 |
Pfam | PF00725 |
3HCDH | Domain | 490 | 580 | 7.1e-18 | 65.6 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。