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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001683

染色体: Chr07 坐标: 14268257-14272614 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001683
名称SmilChr07G001683
描述pentatricopeptide repeat-containing protein At2g35130
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向14268257 - 14272614 / +

ID 对照

NCBI Gene IDLOC130995380
GeneID130995380
locus_tag-
NCBI NameLOC130995380
原始查询SmilChr07G001683

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g35130
产物pentatricopeptide repeat-containing protein At2g35130
ArabidopsisAT2G35130 (AT2G35130)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818079]
identity=65.6; qcov=0.943; evalue=0; confidence=high
RiceOs02g0170000
-
identity=60.3; qcov=0.795; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130995380

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057776631.1
2 Mitochondrion 线粒体 0.40000 XP_057776632.1
3 Chloroplast stroma 叶绿体基质 0.20000 XP_057776631.1
4 Nucleus 细胞核 0.00000 XP_057776631.1
5 Chromosome 染色体 0.00000 XP_057776631.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:14270198 C T EMS_canonical_SNV CDS_variant 2 B91,C7
Chr7:14270289 G A EMS_canonical_SNV CDS_variant 1 A9
Chr7:14270460 G A EMS_canonical_SNV CDS_variant 4 B36,C38,C39,C86
Chr7:14270517 C T EMS_canonical_SNV CDS_variant 5 B7,B91,C33,C46,C7
Chr7:14270553 G A EMS_canonical_SNV CDS_variant 5 A16,B106,B26,B36,C45
Chr7:14270934 C T EMS_canonical_SNV CDS_variant 3 A3,B123,C4
Chr7:14271017 G A EMS_canonical_SNV CDS_variant 3 A19,B132,C14
Chr7:14271060 G A EMS_canonical_SNV CDS_variant 2 C33,C46
Chr7:14271073 G A EMS_canonical_SNV CDS_variant 1 B34
Chr7:14271290 C T EMS_canonical_SNV CDS_variant 1 B7
Chr7:14271556 G A EMS_canonical_SNV CDS_variant 4 B36,C38,C39,C86
Chr7:14271566 G A EMS_canonical_SNV CDS_variant 1 B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776631.1
605 aa
N
1
302
605
PPR_3
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR_3
PPR_3
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR_3
PPR_2
PPR
TPR_24
PPR_1
PPR
PPR_2
PPR_3
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_3
PPR_2
PPR
C
PF13812 PPR_3 174-226 aa PF13041 PPR_2 178-227 aa PF01535 PPR 182-211 aa PF12854 PPR_1 211-242 aa PF01535 PPR 217-246 aa PF23276 TPR_24 217-311 aa PF13812 PPR_3 218-257 aa PF13812 PPR_3 237-298 aa PF13041 PPR_2 248-293 aa PF01535 PPR 252-281 aa PF17177 PPR_long 261-404 aa PF23276 TPR_24 268-368 aa PF13812 PPR_3 272-330 aa PF13041 PPR_2 284-332 aa PF01535 PPR 287-316 aa PF12854 PPR_1 316-345 aa PF01535 PPR 322-351 aa PF23276 TPR_24 326-392 aa PF13812 PPR_3 342-401 aa PF13041 PPR_2 353-400 aa PF01535 PPR 357-386 aa PF23276 TPR_24 367-479 aa PF12854 PPR_1 384-417 aa PF01535 PPR 392-421 aa PF13041 PPR_2 392-428 aa PF13812 PPR_3 412-471 aa PF01535 PPR 430-455 aa PF13041 PPR_2 458-503 aa PF01535 PPR 463-489 aa PF13812 PPR_3 464-504 aa PF12854 PPR_1 488-516 aa PF01535 PPR 494-522 aa PF13812 PPR_3 516-573 aa PF13041 PPR_2 527-574 aa PF01535 PPR 530-559 aa
XP_057776632.1
580 aa
N
1
290
580
PPR_3
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR_3
PPR_3
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_3
PPR_2
PPR
C
PF13812 PPR_3 149-201 aa PF13041 PPR_2 153-202 aa PF01535 PPR 157-186 aa PF12854 PPR_1 186-217 aa PF01535 PPR 192-221 aa PF23276 TPR_24 192-286 aa PF13812 PPR_3 193-232 aa PF13812 PPR_3 212-273 aa PF13041 PPR_2 223-270 aa PF01535 PPR 227-256 aa PF17177 PPR_long 236-379 aa PF23276 TPR_24 244-343 aa PF13812 PPR_3 247-305 aa PF13041 PPR_2 260-307 aa PF01535 PPR 262-291 aa PF12854 PPR_1 291-320 aa PF13041 PPR_2 296-341 aa PF01535 PPR 297-326 aa PF23276 TPR_24 301-367 aa PF13812 PPR_3 317-376 aa PF13041 PPR_2 328-375 aa PF01535 PPR 332-361 aa PF23276 TPR_24 342-454 aa PF17177 PPR_long 351-463 aa PF12854 PPR_1 359-392 aa PF13041 PPR_2 366-403 aa PF01535 PPR 367-396 aa PF13812 PPR_3 387-446 aa PF01535 PPR 405-430 aa PF13041 PPR_2 433-478 aa PF01535 PPR 438-464 aa PF13812 PPR_3 439-479 aa PF12854 PPR_1 463-491 aa PF01535 PPR 469-497 aa PF13812 PPR_3 491-548 aa PF13041 PPR_2 502-549 aa PF01535 PPR 505-534 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 174 226 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 178 227 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF01535 PPR Repeat 182 211 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF12854 PPR_1 Repeat 211 242 1.1e-58 195.3 PPR repeat
XP_057776631.1 Pfam PF01535 PPR Repeat 217 246 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF23276 TPR_24 Repeat 217 311 3e-35 121.8 Pentatricopeptide repeat-containing protein
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 218 257 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 237 298 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 248 293 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF01535 PPR Repeat 252 281 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF17177 PPR_long Repeat 261 404 3.8e-31 108.8 Pentacotripeptide-repeat region of PRORP
XP_057776631.1 Pfam PF23276 TPR_24 Repeat 268 368 3e-35 121.8 Pentatricopeptide repeat-containing protein
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 272 330 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 284 332 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF01535 PPR Repeat 287 316 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF12854 PPR_1 Repeat 316 345 1.1e-58 195.3 PPR repeat
XP_057776631.1 Pfam PF01535 PPR Repeat 322 351 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF23276 TPR_24 Repeat 326 392 3e-35 121.8 Pentatricopeptide repeat-containing protein
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 342 401 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 353 400 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF01535 PPR Repeat 357 386 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF23276 TPR_24 Repeat 367 479 3e-35 121.8 Pentatricopeptide repeat-containing protein
XP_057776631.1 Pfam PF12854 PPR_1 Repeat 384 417 1.1e-58 195.3 PPR repeat
XP_057776631.1 Pfam PF01535 PPR Repeat 392 421 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 392 428 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 412 471 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF01535 PPR Repeat 430 455 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 458 503 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF01535 PPR Repeat 463 489 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 464 504 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF12854 PPR_1 Repeat 488 516 1.1e-58 195.3 PPR repeat
XP_057776631.1 Pfam PF01535 PPR Repeat 494 522 7.1e-76 246.0 PPR repeat
XP_057776631.1 Pfam PF13812 PPR_3 Repeat 516 573 5.6e-67 222.5 Pentatricopeptide repeat domain
XP_057776631.1 Pfam PF13041 PPR_2 Repeat 527 574 4.8e-83 273.8 PPR repeat family
XP_057776631.1 Pfam PF01535 PPR Repeat 530 559 7.1e-76 246.0 PPR repeat
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 149 201 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 153 202 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 157 186 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF12854 PPR_1 Repeat 186 217 6.4e-59 196.1 PPR repeat
XP_057776632.1 Pfam PF01535 PPR Repeat 192 221 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF23276 TPR_24 Repeat 192 286 1.6e-35 122.6 Pentatricopeptide repeat-containing protein
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 193 232 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 212 273 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 223 270 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 227 256 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF17177 PPR_long Repeat 236 379 2.9e-31 109.2 Pentacotripeptide-repeat region of PRORP
XP_057776632.1 Pfam PF23276 TPR_24 Repeat 244 343 1.6e-35 122.6 Pentatricopeptide repeat-containing protein
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 247 305 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 260 307 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 262 291 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF12854 PPR_1 Repeat 291 320 6.4e-59 196.1 PPR repeat
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 296 341 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 297 326 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF23276 TPR_24 Repeat 301 367 1.6e-35 122.6 Pentatricopeptide repeat-containing protein
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 317 376 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 328 375 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 332 361 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF23276 TPR_24 Repeat 342 454 1.6e-35 122.6 Pentatricopeptide repeat-containing protein
XP_057776632.1 Pfam PF17177 PPR_long Repeat 351 463 2.9e-31 109.2 Pentacotripeptide-repeat region of PRORP
XP_057776632.1 Pfam PF12854 PPR_1 Repeat 359 392 6.4e-59 196.1 PPR repeat
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 366 403 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 367 396 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 387 446 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF01535 PPR Repeat 405 430 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 433 478 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 438 464 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 439 479 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF12854 PPR_1 Repeat 463 491 6.4e-59 196.1 PPR repeat
XP_057776632.1 Pfam PF01535 PPR Repeat 469 497 4e-76 246.8 PPR repeat
XP_057776632.1 Pfam PF13812 PPR_3 Repeat 491 548 3.8e-67 223.0 Pentatricopeptide repeat domain
XP_057776632.1 Pfam PF13041 PPR_2 Repeat 502 549 3.6e-85 280.6 PPR repeat family
XP_057776632.1 Pfam PF01535 PPR Repeat 505 534 4e-76 246.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057920648.1
TTCCTCCTTGACATCCTGTGTTTTCTTTTCTACCTCTCATTCTTGGCCACGTCGTTTCTTTTCTTTTATTGAAAGACCAGCATGCTCAGATTATTATTCGCAGCAACTACCTCATTCCAGCTCCCCAAACATAATACCAGGAGCACAAGGAATCCAAGGTTGTCTGTCAAATACCATGCAAACTACATCATCTTTGAGCAAATGCATTGTGAATGTGGATTGAACTTGAGAGCAAAATGTGCTAATGTTGAACCTACTGA...
XM_057920649.1
AACTCACTCAAAATTTTCCAATTGTATACCAACTATATCTTTGGACGACCAACAAATTACATCAACAACTACTGTACAAGACTAAGCAACCCAATGGAAATTAAAACTTAAAGATACTATAACTTTGATTTTTGAGACGGAGTGGTGGAGCGGTTCTAGGCTGCCGCTGCTCCAGGAGGAGAGTGAGGAATTCAGACGCCGCTTAGGGATTGTCTTCATTTTTGAGAGATAGAAGAATGGGGGAGAAGATGGCGATGGCT...

CDS

2 records

下载 CDS FASTA
LOC130995380
ATGCTCAGATTATTATTCGCAGCAACTACCTCATTCCAGCTCCCCAAACATAATACCAGGAGCACAAGGAATCCAAGGTTGTCTGTCAAATACCATGCAAACTACATCATCTTTGAGCAAATGCATTGTGAATGTGGATTGAACTTGAGAGCAAAATGTGCTAATGTTGAACCTACTGAGAAGCGGAAGAAGGACAGCCTCTTCATTGACAAACGTGGAAATTTGAGACATTTCAACCATAAAAAGGTTTCGAGGAAAAA...
LOC130995380
ATGTTGTCTGTCAAATACCATGCAAACTACATCATCTTTGAGCAAATGCATTGTGAATGTGGATTGAACTTGAGAGCAAAATGTGCTAATGTTGAACCTACTGAGAAGCGGAAGAAGGACAGCCTCTTCATTGACAAACGTGGAAATTTGAGACATTTCAACCATAAAAAGGTTTCGAGGAAAAAAGGAGGTTCATTGAGAGGTCAGGGATGGAAGTATGGCTCCGGATTTGTAGATGGGATTTTCCCAGTTTTGAGCCC...

Protein

2 records

下载 Protein FASTA
XP_057776631.1
MLRLLFAATTSFQLPKHNTRSTRNPRLSVKYHANYIIFEQMHCECGLNLRAKCANVEPTEKRKKDSLFIDKRGNLRHFNHKKVSRKKGGSLRGQGWKYGSGFVDGIFPVLSPIAEEILNFVQKEENVSRIWYSLDTLPPTNTTWDDLINIAVRFRLNKKWDPIIVMCEWMSQQSTFKPDVICYNLLIEAYGQKLQFKKAESIYLELVEARCIPTQDTYALLVKAYCKGGKLEHAEAVFAEMRRNGFPPSTIVYNAYIDGL...
XP_057776632.1
MLSVKYHANYIIFEQMHCECGLNLRAKCANVEPTEKRKKDSLFIDKRGNLRHFNHKKVSRKKGGSLRGQGWKYGSGFVDGIFPVLSPIAEEILNFVQKEENVSRIWYSLDTLPPTNTTWDDLINIAVRFRLNKKWDPIIVMCEWMSQQSTFKPDVICYNLLIEAYGQKLQFKKAESIYLELVEARCIPTQDTYALLVKAYCKGGKLEHAEAVFAEMRRNGFPPSTIVYNAYIDGLMKARNSQHALAVFEKMKRDNCELNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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