当前解析结果
SmilChr07G001684| 统一新 Gene ID | SmilChr07G001684 |
|---|---|
| 名称 | SmilChr07G001684 |
| 描述 | exopolygalacturonase clone GBGE184-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14274175 - 14279615 / - |
| NCBI Gene ID | LOC130995381 |
|---|---|
| GeneID | 130995381 |
| locus_tag | - |
| NCBI Name | LOC130995381 |
| 原始查询 | SmilChr07G001684 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exopolygalacturonase clone GBGE184-like |
| 产物 | exopolygalacturonase clone GBGE184-like |
| Arabidopsis | AT1G02790 (PGA4)polygalacturonase 4 [Source:NCBI gene (formerly Entrezgene);Acc:839391] identity=43.7; qcov=0.936; evalue=1.59e-105; confidence=medium |
| Rice | Os01g0517500 (OsPGL3)- identity=38.8; qcov=0.99; evalue=2e-96; confidence=medium |
| GO | GO:0004650 (polygalacturonase activity); GO:0005975 (carbohydrate metabolic process) |
| KEGG | smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00295 (Glyco_hydro_28); PF12708 (Pect-lyase_RHGA_epim) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995381 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.60000 | XP_057776634.1 |
| 2 | Secreted | 分泌到胞外 | 0.60000 | XP_057776634.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776634.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776634.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776634.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14274582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B106,B26,B36,C45 |
Chr7:14274636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B104,B59,C27 |
Chr7:14274673 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B7 |
Chr7:14274911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:14275089 |
ACC |
A |
2bp_deletion | frameshift_variant | 4 | A7,B134,B65,C36 |
Chr7:14275099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:14275186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,D11 |
Chr7:14275260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr7:14275294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C7 |
Chr7:14275302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C7 |
Chr7:14275352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:14275363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,B7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776634.1PF12708
Pect-lyase_RHGA_epim 39-277 aa
PF00295
Glyco_hydro_28 66-389 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776634.1 |
Pfam | PF12708 |
Pect-lyase_RHGA_epim | Repeat | 39 | 277 | 8.7e-09 | 36.2 | Rhamnogalacturonase A/epimerase, pectate lyase-like |
XP_057776634.1 |
Pfam | PF00295 |
Glyco_hydro_28 | Repeat | 66 | 389 | 2e-86 | 290.8 | Glycosyl hydrolases family 28 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。