当前解析结果
SmilChr07G001726| 统一新 Gene ID | SmilChr07G001726 |
|---|---|
| 名称 | SmilChr07G001726 |
| 描述 | DNA replication licensing factor MCM7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14692776 - 14698533 / - |
| NCBI Gene ID | LOC130995414 |
|---|---|
| GeneID | 130995414 |
| locus_tag | - |
| NCBI Name | LOC130995414 |
| 原始查询 | SmilChr07G001726 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA replication licensing factor MCM7 |
| 产物 | DNA replication licensing factor MCM7 |
| Arabidopsis | AT4G02060 (PRL)Minichromosome maintenance (MCM2/3/5) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828153] identity=82; qcov=0.997; evalue=0; confidence=high |
| Rice | Os12g0560700 (OsMCM7)- identity=85.1; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0000727 (double-strand break repair via break-induced replication); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006268 (GO:0006268); GO:0006270 (DNA replication initiation); GO:0006271 (DNA strand elongation involved in DNA replication); GO:0017116 (single-stranded DNA helicase activity); GO:0042555 (MCM complex) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00493 (MCM); PF01078 (Mg_chelatase); PF14551 (MCM_N); PF17207 (MCM_OB); PF17855 (MCM_lid); PF24901 (WHD_MCM7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995414 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776667.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057776667.1 |
| 3 | Chromatin | 染色质 | 0.20000 | XP_057776667.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057776667.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776667.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14693027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,C16,D4 |
Chr7:14693932 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B92 |
Chr7:14693932 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B92 |
Chr7:14693991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B46,C32,C68,C8 |
Chr7:14694803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B129,B7,D7 |
Chr7:14696193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,A6,B61 |
Chr7:14696208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,D10 |
Chr7:14696937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B129,B7,D7 |
Chr7:14697340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B59 |
Chr7:14697375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,C33,C46 |
Chr7:14697954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776667.1PF14551
MCM_N 13-99 aa
PF17207
MCM_OB 143-274 aa
PF00493
MCM 314-536 aa
PF01078
Mg_chelatase 425-487 aa
PF17855
MCM_lid 553-636 aa
PF24901
WHD_MCM7 681-716 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776667.1 |
Pfam | PF14551 |
MCM_N | Domain | 13 | 99 | 2.6e-10 | 41.3 | MCM N-terminal domain |
XP_057776667.1 |
Pfam | PF17207 |
MCM_OB | Domain | 143 | 274 | 1.5e-33 | 116.0 | MCM OB domain |
XP_057776667.1 |
Pfam | PF00493 |
MCM | Domain | 314 | 536 | 7.5e-102 | 339.9 | MCM P-loop domain |
XP_057776667.1 |
Pfam | PF01078 |
Mg_chelatase | Domain | 425 | 487 | 7.8e-07 | 29.4 | Magnesium chelatase, subunit ChlI |
XP_057776667.1 |
Pfam | PF17855 |
MCM_lid | Domain | 553 | 636 | 2e-22 | 80.2 | MCM AAA-lid domain |
XP_057776667.1 |
Pfam | PF24901 |
WHD_MCM7 | Domain | 681 | 716 | 9.4e-07 | 29.3 | DNA replication licensing factor MCM7, winged helix |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。