Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001727`

染色体: Chr07 坐标: 14700679-14709887 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001727`
名称	SmilChr07G001727
描述	vacuolar protein sorting-associated protein 51 homolog
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14700679 - 14709887 / `-`

ID 对照

NCBI Gene ID	`LOC130995416`
GeneID	`130995416`
locus_tag	`-`
NCBI Name	`LOC130995416`
原始查询	`SmilChr07G001727`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 51 homolog
产物	vacuolar protein sorting-associated protein 51 homolog
Arabidopsis	`AT4G02030` (AT4G02030) Vps51/Vps67 family (components of vesicular transport) protein [Source:NCBI gene (formerly Entrezgene);Acc:828155] identity=61.4; qcov=1; evalue=0; confidence=high
Rice	`Os03g0737800` - identity=58.3; qcov=0.994; evalue=0; confidence=high
GO	GO:0000938 (GARP complex); GO:0007030 (Golgi organization); GO:0007041 (lysosomal transport); GO:0016020 (membrane); GO:0032456 (endocytic recycling); GO:0042147 (retrograde transport, endosome to Golgi); GO:0048193 (Golgi vesicle transport); GO:1990745 (EARP complex)
KEGG	-
Pfam	PF04124 (Dor1); PF08700 (VPS51_Exo84_N); PF15469 (Sec5); PF20651 (EXOC6_Sec15_N)
InterPro	-
eggNOG	-
NR	GeneID:130995416

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057776670.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057776671.1`
3	Cytoplasm	细胞质	0.80000	`XP_057776670.1`
4	Cytosol	细胞质基质	0.60000	`XP_057776670.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057776671.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14701019`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B128,C50
`Chr7:14701114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B120,B35
`Chr7:14701117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr7:14701719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,A6,B61
`Chr7:14701799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B72,C1,C53,C83
`Chr7:14702596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B6,C22
`Chr7:14702807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:14703984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:14704448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:14704462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,B65
`Chr7:14704488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr7:14704653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B111,B38,B39,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776670.1

784 aa

392

784

Sec5

VPS51_Exo84_N

Dor1

EXOC6_Sec15_N

PF15469 Sec5 48-269 aa PF08700 VPS51_Exo84_N 49-133 aa PF04124 Dor1 65-205 aa PF20651 EXOC6_Sec15_N 80-186 aa

XP_057776671.1

675 aa

338

675

Sec5

PF15469 Sec5 9-160 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776670.1`	Pfam	`PF15469`	Sec5	Repeat	48	269	1e-18	67.7	Exocyst complex component Sec5
`XP_057776670.1`	Pfam	`PF08700`	VPS51_Exo84_N	Repeat	49	133	4.5e-23	81.9	Vps51/EXO84/COG1 N-terminal
`XP_057776670.1`	Pfam	`PF04124`	Dor1	Repeat	65	205	3.3e-12	46.6	Dor1-like family
`XP_057776670.1`	Pfam	`PF20651`	EXOC6_Sec15_N	Repeat	80	186	1.4e-06	29.1	Exocyst complex component EXOC6/Sec15, N-terminal
`XP_057776671.1`	Pfam	`PF15469`	Sec5	Repeat	9	160	1.8e-12	47.0	Exocyst complex component Sec5

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920687.1
GGGATTATGCGAATGTTTATGTAAATTGAAATCTGAAAGATGACCGAAATTAAAAGCGTAAAAATATAAATTTCCCAATTTTATTAATTTGTTAGTTACTGCGGTGGAAAACAGAAGGGGGGAGAGAAAATAATCGACCGAATACTTATTTTCCAAATTTGTGTCTGCATTGCATCAACAGAAATCACAGAAGAAGAGGAATTGCAGGAAGCAGTAGCTGAGCTGTGAGAAAAAATGGAGGTGGAAGGAGCACTGCCGAT...

XM_057920688.1
CAGAAGCATGTGGAAATGGCTGCTGAGATAAAAAATCTAGACACTGACCTTCAAATGCTGGTGTACGAGAACTACAACAAATTCATCAGTGCAACAGATACAATAAAGAAGTCAACCTAATTGTTCACCTGTTTATAGGATGAAAAACAATATTGTTGGCATGGAGACAAACATGGAGCAGCTTCTGGAAAAGATTACATCTGTGCAATCTAGGAGCGATGGGGTTAATACTTCTCTTTTCGAAAAGAGAGAACATATAG...

CDS

2 records

下载 CDS FASTA

LOC130995416
ATGGAGGTGGAAGGAGCACTGCCGATGGACGACAAGGCGAAGCGAATGAGAGATCTGCTCTCCAGTTTCTATACTCCCGACCAATCGTCTTCCGGATCGCCGCCGCCCAACACTGTTTCTAGATTCGCCACCCTCGATACCATCAACACCACTTCATTCGACGCAGATCAGTACATGAATCTTCTCGTACAAAAGTCAAGCCTGGAGGGTCTTCTTCAGAAGCATGTGGAAATGGCTGCTGAGATAAAAAATCTAGACAC...

LOC130995416
ATGAAAAACAATATTGTTGGCATGGAGACAAACATGGAGCAGCTTCTGGAAAAGATTACATCTGTGCAATCTAGGAGCGATGGGGTTAATACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAGTTGCACCGCACACGCAATCTGCTTCGAAAAGTTCAGTTTATATATGATCTACCTACAAGACTTCAGAAATGCATCAAGTCAGAGGCCTATGCTGAAGCAGTAAAGTTTTATACAGGGGCCACTCCAATATTCAA...

Protein

2 records

下载 Protein FASTA

XP_057776670.1
MEVEGALPMDDKAKRMRDLLSSFYTPDQSSSGSPPPNTVSRFATLDTINTTSFDADQYMNLLVQKSSLEGLLQKHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKKMKNNIVGMETNMEQLLEKITSVQSRSDGVNTSLFEKREHIEKLHRTRNLLRKVQFIYDLPTRLQKCIKSEAYAEAVKFYTGATPIFKAYGDSSFLDCKRASEEAVSVIINNLQGKVFSDSESIQARAEAVMLLKKLDFPVENLKVKLFEKL...

XP_057776671.1
MKNNIVGMETNMEQLLEKITSVQSRSDGVNTSLFEKREHIEKLHRTRNLLRKVQFIYDLPTRLQKCIKSEAYAEAVKFYTGATPIFKAYGDSSFLDCKRASEEAVSVIINNLQGKVFSDSESIQARAEAVMLLKKLDFPVENLKVKLFEKLEQFLVDLDLEYKELANVPVNIDESTNQDSASTTTHEASVHEFVEAVRAYKVIFLHSELQLCNLGQDLVKKHFEAIHQQIMKQVRSADLLAMLRVIWTDVLLMDEVLPEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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