当前解析结果
SmilChr07G001735| 统一新 Gene ID | SmilChr07G001735 |
|---|---|
| 名称 | SmilChr07G001735 |
| 描述 | uncharacterized SmilChr07G001735 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14737741 - 14750976 / + |
| NCBI Gene ID | LOC130995423 |
|---|---|
| GeneID | 130995423 |
| locus_tag | - |
| NCBI Name | LOC130995423 |
| 原始查询 | SmilChr07G001735 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Carbohydrate-binding-like fold [Source:NCBI gene (formerly Entrezgene);Acc:825409]; symbol=AT3G62360; hit=AT3G62360; species=arabidopsis; confidence=high |
| 产物 | Carbohydrate-binding-like fold [Source:NCBI gene (formerly Entrezgene);Acc:825409]; symbol=AT3G62360; hit=AT3G62360; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G62360 (AT3G62360)Carbohydrate-binding-like fold [Source:NCBI gene (formerly Entrezgene);Acc:825409] identity=60.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0300600- identity=59.8; qcov=0.348; evalue=4.69e-162; confidence=low |
| GO | GO:0005789 (endoplasmic reticulum membrane); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF13620 (CarboxypepD_reg); PF22898 (NOMO1-like_1st); PF22902 (NOMO1-like_9th); PF22904 (NOMO1-like_2nd); PF23141 (Ig_NOMO); PF23193 (NOMO_3rd); PF23194 (NOMO_5th); PF23660 (NOMO_8th); PF23662 (DUF7152) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995423 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057776677.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057776677.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057776677.1 |
| 4 | Golgi stack | 高尔基堆 | 0.20000 | XP_057776677.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057776677.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14738108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B35 |
Chr7:14739447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B52,B98,C55,D11 |
Chr7:14739670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,B72 |
Chr7:14740149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:14740763 |
GAA |
G |
2bp_deletion | frameshift_variant | 6 | B131,B69,C14,C72,C73,D11 |
Chr7:14740766 |
T |
TTA |
2bp_insertion | frameshift_variant | 6 | B131,B69,C14,C72,C73,D11 |
Chr7:14741591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr7:14741608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,C53 |
Chr7:14741624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,C53 |
Chr7:14742339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,C27 |
Chr7:14742359 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:14742919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B10,B35,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776677.1PF22898
NOMO1-like_1st 46-130 aa
PF22904
NOMO1-like_2nd 132-222 aa
PF23193
NOMO_3rd 273-331 aa
PF23194
NOMO_5th 424-497 aa
PF23141
Ig_NOMO 599-671 aa
PF23660
NOMO_8th 673-774 aa
PF22902
NOMO1-like_9th 776-849 aa
PF13620
CarboxypepD_reg 950-1003 aa
PF23662
DUF7152 1042-1136 aa
XP_057776678.1PF22898
NOMO1-like_1st 46-122 aa
PF22904
NOMO1-like_2nd 124-214 aa
PF23193
NOMO_3rd 265-323 aa
PF23194
NOMO_5th 416-489 aa
PF23141
Ig_NOMO 591-663 aa
PF23660
NOMO_8th 665-766 aa
PF22902
NOMO1-like_9th 768-841 aa
PF13620
CarboxypepD_reg 942-995 aa
PF23662
DUF7152 1034-1128 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776677.1 |
Pfam | PF22898 |
NOMO1-like_1st | Domain | 46 | 130 | 6.9e-30 | 103.7 | BOS complex subunit NOMO1-like, first beta sandwich domain |
XP_057776677.1 |
Pfam | PF22904 |
NOMO1-like_2nd | Domain | 132 | 222 | 2.8e-47 | 159.5 | BOS complex subunit NOMO1-like, second beta sandwich domain |
XP_057776677.1 |
Pfam | PF23193 |
NOMO_3rd | Domain | 273 | 331 | 1.2e-16 | 61.5 | NOMO third transthyretin-like domain |
XP_057776677.1 |
Pfam | PF23194 |
NOMO_5th | Domain | 424 | 497 | 2.1e-17 | 64.0 | NOMO fifth transthyretin-like domain |
XP_057776677.1 |
Pfam | PF23141 |
Ig_NOMO | Domain | 599 | 671 | 1.1e-25 | 90.2 | NOMO Ig-like domain |
XP_057776677.1 |
Pfam | PF23660 |
NOMO_8th | Domain | 673 | 774 | 3.3e-36 | 124.2 | NOMO eighth prealbumin-like domain |
XP_057776677.1 |
Pfam | PF22902 |
NOMO1-like_9th | Domain | 776 | 849 | 2.4e-19 | 69.6 | BOS complex subunit NOMO1-like, beta sandwich domain |
XP_057776677.1 |
Pfam | PF13620 |
CarboxypepD_reg | Domain | 950 | 1003 | 7.2e-47 | 158.4 | Carboxypeptidase regulatory-like domain |
XP_057776677.1 |
Pfam | PF23662 |
DUF7152 | Domain | 1042 | 1136 | 2e-42 | 144.3 | Domain of unknown function (DUF7152) |
XP_057776678.1 |
Pfam | PF22898 |
NOMO1-like_1st | Domain | 46 | 122 | 1.9e-33 | 115.1 | BOS complex subunit NOMO1-like, first beta sandwich domain |
XP_057776678.1 |
Pfam | PF22904 |
NOMO1-like_2nd | Domain | 124 | 214 | 8.9e-49 | 164.3 | BOS complex subunit NOMO1-like, second beta sandwich domain |
XP_057776678.1 |
Pfam | PF23193 |
NOMO_3rd | Domain | 265 | 323 | 3.3e-17 | 63.3 | NOMO third transthyretin-like domain |
XP_057776678.1 |
Pfam | PF23194 |
NOMO_5th | Domain | 416 | 489 | 1.8e-17 | 64.2 | NOMO fifth transthyretin-like domain |
XP_057776678.1 |
Pfam | PF23141 |
Ig_NOMO | Domain | 591 | 663 | 1e-25 | 90.2 | NOMO Ig-like domain |
XP_057776678.1 |
Pfam | PF23660 |
NOMO_8th | Domain | 665 | 766 | 8.4e-36 | 122.9 | NOMO eighth prealbumin-like domain |
XP_057776678.1 |
Pfam | PF22902 |
NOMO1-like_9th | Domain | 768 | 841 | 2.3e-19 | 69.7 | BOS complex subunit NOMO1-like, beta sandwich domain |
XP_057776678.1 |
Pfam | PF13620 |
CarboxypepD_reg | Domain | 942 | 995 | 5e-48 | 162.1 | Carboxypeptidase regulatory-like domain |
XP_057776678.1 |
Pfam | PF23662 |
DUF7152 | Domain | 1034 | 1128 | 1.9e-42 | 144.3 | Domain of unknown function (DUF7152) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。