当前解析结果
SmilChr07G001743| 统一新 Gene ID | SmilChr07G001743 |
|---|---|
| 名称 | SmilChr07G001743 |
| 描述 | ABC transporter B family member 11-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14790433 - 14796584 / + |
| NCBI Gene ID | LOC130995430 |
|---|---|
| GeneID | 130995430 |
| locus_tag | - |
| NCBI Name | LOC130995430 |
| 原始查询 | SmilChr07G001743 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 11-like |
| 产物 | ABC transporter B family member 11-like |
| Arabidopsis | AT1G02520 (ABCB11)P-glycoprotein 11 [Source:NCBI gene (formerly Entrezgene);Acc:839353] identity=74.8; qcov=0.994; evalue=0; confidence=high |
| Rice | Os01g0695700 (OsABCB4)- identity=57.3; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995430 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776688.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057776688.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057776688.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776688.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776688.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14791030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr7:14792735 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B53 |
Chr7:14792735 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B53 |
Chr7:14793010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:14794334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B16,B4,B45,C41 |
Chr7:14794361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:14794378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B42,C76 |
Chr7:14794420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C50 |
Chr7:14794447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B42,C76 |
Chr7:14794493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:14794524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B52,B98,C55 |
Chr7:14794557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B60,C15,C35,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776688.1PF00664
ABC_membrane 38-311 aa
PF00005
ABC_tran 379-527 aa
PF00664
ABC_membrane 688-960 aa
PF00005
ABC_tran 1029-1178 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776688.1 |
Pfam | PF00664 |
ABC_membrane | Family | 38 | 311 | 7e-122 | 407.1 | ABC transporter transmembrane region |
XP_057776688.1 |
Pfam | PF00005 |
ABC_tran | Domain | 379 | 527 | 2.6e-72 | 242.5 | ABC transporter |
XP_057776688.1 |
Pfam | PF00664 |
ABC_membrane | Family | 688 | 960 | 7e-122 | 407.1 | ABC transporter transmembrane region |
XP_057776688.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1029 | 1178 | 2.6e-72 | 242.5 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。