Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001746

染色体: Chr07 坐标: 14809767-14815717 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001746
名称SmilChr07G001746
描述uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向14809767 - 14815717 / +

ID 对照

NCBI Gene IDLOC130995432
GeneID130995432
locus_tag-
NCBI NameLOC130995432
原始查询SmilChr07G001746

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830402]; symbol=AT5G05200; hit=AT5G05200; species=arabidopsis; confidence=high
产物Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830402]; symbol=AT5G05200; hit=AT5G05200; species=arabidopsis; confidence=high
ArabidopsisAT5G05200 (AT5G05200)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830402]
identity=74.5; qcov=1; evalue=0; confidence=high
RiceOs07g0227800
-
identity=74.3; qcov=0.914; evalue=0; confidence=high
GOGO:0005886 (plasma membrane); GO:0010287 (plastoglobule)
KEGG-
PfamPF03109 (ABC1)
InterPro-
eggNOG-
NRGeneID:130995432

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057776690.1
2 Chloroplast thylakoid 类囊体 1.00000 XP_057776690.1
3 Chloroplast thylakoid membrane 类囊体膜 0.60000 XP_057776690.1
4 Chloroplast stroma 叶绿体基质 0.40000 XP_057776690.1
5 Chloroplast membrane 叶绿体膜 0.20000 XP_057776690.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:14810025 C T EMS_canonical_SNV CDS_variant 1 C57
Chr7:14810131 G A EMS_canonical_SNV CDS_variant 1 B104
Chr7:14810179 G A EMS_canonical_SNV CDS_variant 4 A16,B106,B26,C45
Chr7:14810777 G A EMS_canonical_SNV CDS_variant 4 B121,B128,B34,C50
Chr7:14812905 G A EMS_canonical_SNV CDS_variant 3 A23,B86,C76
Chr7:14814546 G A EMS_canonical_SNV stop_gained 1 B55
Chr7:14814546 G A EMS_canonical_SNV CDS_variant 1 B55
Chr7:14815154 C T EMS_canonical_SNV CDS_variant 3 B58,B68,C74
Chr7:14815171 GC G 1bp_deletion frameshift_variant 5 B100,B11,B51,C18,D2
Chr7:14815171 GC G 1bp_deletion CDS_variant 5 B100,B11,B51,C18,D2
Chr7:14815173 A AGC 2bp_insertion frameshift_variant 5 B100,B11,B51,C18,D2
Chr7:14815173 A AGC 2bp_insertion CDS_variant 5 B100,B11,B51,C18,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057776690.1
533 aa
N
1
266
533
ABC1
C
PF03109 ABC1 165-411 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776690.1 Pfam PF03109 ABC1 Domain 165 411 1.3e-60 205.3 ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057920707.1
GAAAAGACGTTGTGGTAATGTAAATAGGCGCGAGACGTGGCCATTTCCATTTCACTATTGAGGGAGGATATTTATATTTTATACCAAACGAGACGAGAAGAAGAAAACTCAAATAGAAATATTAGCCTGATTTCTCGTGAATAATTAATGTAAGTAAACAAGAATTGAGTGAATCATCATTCTTCAAATATAAAGAAATGGCCGGAATTACAGTGCTGAGGGGCGCCGCTACTGTCCGCGCACCTGTCATTCATCACGCT...

CDS

1 records

下载 CDS FASTA
LOC130995432
ATGGCCGGAATTACAGTGCTGAGGGGCGCCGCTACTGTCCGCGCACCTGTCATTCATCACGCTCAGTTACCAGCGTCCATACGCTTATCCACTAGGAAGCTCAGATATGGCCCTAGTAAATTTTCCGTTCTGGCGCGTTACGCGCAATCGCAGGATTTCTCCACCCGTCTTCAAGATAGTATGCAGAACTTGCCCAAACTTCTGGAGGATATAGTCCAGACATCCATAAATACAGGTCCTCGTGGAGCTCTTAGGCTAGC...

Protein

1 records

下载 Protein FASTA
XP_057776690.1
MAGITVLRGAATVRAPVIHHAQLPASIRLSTRKLRYGPSKFSVLARYAQSQDFSTRLQDSMQNLPKLLEDIVQTSINTGPRGALRLAQGIQAVIGVGSEWVADASKAANSSSGLATDLQLGLLSPLYLRKLFERLGATYIKLGQFIASAPTLFPPEYVQEFQYCFDRAPTIPFQEIQAILRQELGRPIDTVFEFVDPTPVASASIAQVHGARIRGTREDVVIKVLKPGIEDILVADLNFVYIVARILEFLSPDLSRASLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器