当前解析结果
SmilChr07G001751| 统一新 Gene ID | SmilChr07G001751 |
|---|---|
| 名称 | SmilChr07G001751 |
| 描述 | uncharacterized SmilChr07G001751 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 14837466 - 14848239 / - |
| NCBI Gene ID | LOC130995437 |
|---|---|
| GeneID | 130995437 |
| locus_tag | - |
| NCBI Name | LOC130995437 |
| 原始查询 | SmilChr07G001751 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heteroglycan glucosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821944]; symbol=HGL1; hit=AT3G23640; species=arabidopsis; confidence=medium |
| 产物 | heteroglycan glucosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821944]; symbol=HGL1; hit=AT3G23640; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G23640 (HGL1)heteroglycan glucosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821944] identity=59.7; qcov=0.607; evalue=8.37e-44; confidence=medium |
| Rice | Os07g0420700- identity=55.3; qcov=0.628; evalue=4.12e-38; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995437 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057776699.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 0.40000 | XP_057776699.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057776700.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776699.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776699.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:14837475 |
ATT |
A |
2bp_deletion | frameshift_variant | 11 | A22,A4,A9,B128,B131,B26,B51,B57,B94,C22,D10 |
Chr7:14837480 |
T |
TA |
1bp_insertion | frameshift_variant | 11 | A22,A4,A9,B128,B131,B26,B51,B57,B94,C22,D10 |
Chr7:14837488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,C33 |
Chr7:14837506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B11,B137,B69 |
Chr7:14837507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C37,D5 |
Chr7:14837510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B119,B18,B37,C53 |
Chr7:14837516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B80,C42 |
Chr7:14837518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr7:14837529 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B65,C18,C2 |
Chr7:14837529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C18,C2 |
Chr7:14837543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr7:14837592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B128,B93,C64,C66,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。