Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001760`

染色体: Chr07 坐标: 14900270-14907400 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001760`
名称	SmilChr07G001760
描述	transcriptional corepressor LEUNIG_HOMOLOG
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	14900270 - 14907400 / `-`

ID 对照

NCBI Gene ID	`LOC130995446`
GeneID	`130995446`
locus_tag	`-`
NCBI Name	`LOC130995446`
原始查询	`SmilChr07G001760`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional corepressor LEUNIG_HOMOLOG
产物	transcriptional corepressor LEUNIG_HOMOLOG
Arabidopsis	`AT2G32700` (LUH) LEUNIG-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817830] identity=65.2; qcov=1.03; evalue=0; confidence=high
Rice	`Os02g0813800` (OsWD40-58) - identity=63.6; qcov=1.05; evalue=0; confidence=high
GO	GO:0003714 (transcription corepressor activity); GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF08513 (LisH); PF23381 (Beta-prop_IFT122_1st); PF30097 (LisH_SSDP)
InterPro	-
eggNOG	-
NR	GeneID:130995446

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776709.1`
2	Nucleoplasm	核质	1.00000	`XP_057776709.1`
3	Chromosome	染色体	0.00000	`XP_057776709.1`
4	Centromere	着丝粒	0.00000	`XP_057776709.1`
5	Chromatin	染色质	0.00000	`XP_057776709.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:14901044`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B21
`Chr7:14901044`	`GC`	`G`	1bp_deletion	CDS_variant	1	B21
`Chr7:14901099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr7:14903141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr7:14903434`	`G`	`GA`	1bp_insertion	frameshift_variant	6	B38,B39,B5,C17,C63,D3
`Chr7:14903454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776709.1

771 aa

386

771

LisH

LisH_SSDP

WD40

Beta-prop_IFT122_1st

WD40

PF08513 LisH 10-36 aa PF30097 LisH_SSDP 12-66 aa PF00400 WD40 494-521 aa PF23381 Beta-prop_IFT122_1st 496-771 aa PF00400 WD40 530-563 aa PF00400 WD40 569-606 aa PF00400 WD40 653-688 aa PF00400 WD40 737-770 aa

XP_057776710.1

771 aa

386

771

LisH

LisH_SSDP

WD40

Beta-prop_IFT122_1st

WD40

XP_057776711.1

771 aa

386

771

LisH

LisH_SSDP

WD40

Beta-prop_IFT122_1st

WD40

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776709.1`	Pfam	`PF08513`	LisH	Domain	10	36	1.3e-06	28.8	LisH
`XP_057776709.1`	Pfam	`PF30097`	LisH_SSDP	Domain	12	66	5.3e-25	88.3	SSDP, dimerisation domain
`XP_057776709.1`	Pfam	`PF00400`	WD40	Repeat	494	521	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776709.1`	Pfam	`PF23381`	Beta-prop_IFT122_1st	Repeat	496	771	1.6e-37	130.1	IFT122 first beta-propeller
`XP_057776709.1`	Pfam	`PF00400`	WD40	Repeat	530	563	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776709.1`	Pfam	`PF00400`	WD40	Repeat	569	606	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776709.1`	Pfam	`PF00400`	WD40	Repeat	653	688	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776709.1`	Pfam	`PF00400`	WD40	Repeat	737	770	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776710.1`	Pfam	`PF08513`	LisH	Domain	10	36	1.3e-06	28.8	LisH
`XP_057776710.1`	Pfam	`PF30097`	LisH_SSDP	Domain	12	66	5.3e-25	88.3	SSDP, dimerisation domain
`XP_057776710.1`	Pfam	`PF00400`	WD40	Repeat	494	521	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776710.1`	Pfam	`PF23381`	Beta-prop_IFT122_1st	Repeat	496	771	1.6e-37	130.1	IFT122 first beta-propeller
`XP_057776710.1`	Pfam	`PF00400`	WD40	Repeat	530	563	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776710.1`	Pfam	`PF00400`	WD40	Repeat	569	606	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776710.1`	Pfam	`PF00400`	WD40	Repeat	653	688	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776710.1`	Pfam	`PF00400`	WD40	Repeat	737	770	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776711.1`	Pfam	`PF08513`	LisH	Domain	10	36	1.3e-06	28.8	LisH
`XP_057776711.1`	Pfam	`PF30097`	LisH_SSDP	Domain	12	66	5.3e-25	88.3	SSDP, dimerisation domain
`XP_057776711.1`	Pfam	`PF00400`	WD40	Repeat	494	521	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776711.1`	Pfam	`PF23381`	Beta-prop_IFT122_1st	Repeat	496	771	1.6e-37	130.1	IFT122 first beta-propeller
`XP_057776711.1`	Pfam	`PF00400`	WD40	Repeat	530	563	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776711.1`	Pfam	`PF00400`	WD40	Repeat	569	606	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776711.1`	Pfam	`PF00400`	WD40	Repeat	653	688	2.5e-33	113.8	WD domain, G-beta repeat
`XP_057776711.1`	Pfam	`PF00400`	WD40	Repeat	737	770	2.5e-33	113.8	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920726.1
CTCCCATCTTACGGAGTCCCCACTCCGAGCCTCCGCCCCTATATAACCCTAACGTTTGATTCCCCCTCCCAGAGCTCAGGCTCAGATCCCGACGCGACCGCTTTCCAGCTATTTTTCGGATTTCCCGTAGCCGATATTTTTCTCTCACTCTTTTAATCAGATATGCTTCCTTCTTCGCACTGGAATTCATGAGTCATAATCCGGTTGTTAATCCTTTTTCGTTTTGGGTTTCTGATTTTAGAATCATCTATATTTTATTT...

XM_057920728.1
GATTCCCCCTCCCAGAGCTCAGGCTCAGATCCCGACGCGACCGCTTTCCAGCTATTTTTCGGATTTCCCGTAGCCGATATTTTTCTCTCACTCTTTTAATCAGATATGCTTCCTTCTTCGCACTGGAATTCATGAGTCATAATCCGGTTGTTAATCCTTTTTCGTTTTGGGTTTCTGATTTTAGAATCATCTATATTTTATTTTTGAACGAGGTGGTAAAATTTGAGTAGTTGTTGAGAAGGATGGTAGCATGAAATTGA...

CDS

3 records

下载 CDS FASTA

LOC130995446
ATGGCTCAGAGTAATTGGGAAGCGGATAAAATGCTTGATGTATACATTCATGATTATTTGTTGAAAAGAAAACTGCATAATTCTGCGAAAGCTTTCATGACAGAAGGAAAAGTTGCTACAGATCCTGTGGCTATTGATGCCCCAGGAGGATTTCTTTTTGAATGGTGGTCTGTATTCTGGGACATTTTCATTGCAAGGACAAACGAGAAGCATTCTGAACCAGCTGCAGCTTACATAGAGACGCAACAAATCAAACAAAG...

Protein

3 records

下载 Protein FASTA

XP_057776709.1
MAQSNWEADKMLDVYIHDYLLKRKLHNSAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIETQQIKQREQQQQLQMQQLQLMQQRSAQLQRRDPNHPPLGGPMNSEGMMGQPSASVLAMKMYEERMKHPHPMDSETSPGLIEANRMALLKSASGQQGQLIQGNSGGMSAALQQMQGRPQLATDNKGEVNLGATQKSLPMDPSSIYGQVLQSKSGLGGAGLNQGVTGLPLKGWPLTGIDQLR...

XP_057776710.1
MAQSNWEADKMLDVYIHDYLLKRKLHNSAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIETQQIKQREQQQQLQMQQLQLMQQRSAQLQRRDPNHPPLGGPMNSEGMMGQPSASVLAMKMYEERMKHPHPMDSETSPGLIEANRMALLKSASGQQGQLIQGNSGGMSAALQQMQGRPQLATDNKGEVNLGATQKSLPMDPSSIYGQVLQSKSGLGGAGLNQGVTGLPLKGWPLTGIDQLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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