Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001794

染色体: Chr07 坐标: 15294363-15296856 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001794
名称SmilChr07G001794
描述protein NETWORKED 4A-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向15294363 - 15296856 / -

ID 对照

NCBI Gene IDLOC130995482
GeneID130995482
locus_tag-
NCBI NameLOC130995482
原始查询SmilChr07G001794

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述protein NETWORKED 4A-like
产物protein NETWORKED 4A-like
ArabidopsisAT5G05180 (AT5G05180)
myosin heavy chain, striated protein [Source:NCBI gene (formerly Entrezgene);Acc:830400]
identity=27.7; qcov=0.902; evalue=1.23e-28; confidence=low
RiceOs05g0168800
-
identity=33; qcov=0.715; evalue=6.9e-31; confidence=low
GOGO:0005774 (vacuolar membrane)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130995482

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus membrane 核膜 0.60000 XP_057776761.1
2 Nucleus 细胞核 0.40000 XP_057776761.1
3 Cytoplasm 细胞质 0.20000 XP_057776761.1
4 Chromosome 染色体 0.00000 XP_057776761.1
5 Centromere 着丝粒 0.00000 XP_057776761.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:15294521 G A EMS_canonical_SNV CDS_variant 1 C10
Chr7:15294533 G A EMS_canonical_SNV CDS_variant 1 B73
Chr7:15294561 G A EMS_canonical_SNV CDS_variant 4 B108,B131,B75,C16
Chr7:15294562 C T EMS_canonical_SNV CDS_variant 4 B111,B99,C23,C8
Chr7:15294575 G A EMS_canonical_SNV CDS_variant 5 C32,C46,C68,C72,C83
Chr7:15294601 G A EMS_canonical_SNV CDS_variant 2 C27,C71
Chr7:15294747 G A EMS_canonical_SNV CDS_variant 5 C32,C46,C68,C72,C83
Chr7:15294798 GAT G 2bp_deletion frameshift_variant 57 A16,A2,A3,A5,B106,B112,B114,B120,B15,B23,B33,B40,B46,B48,B52,B53,B64,B65,B71,B75,B76,B78,B8,B81,B87,B88,B89,B91,B95,B97,B99,C15,C18,C24,C25,C34,C35,C37,C4,C40,C42,C46,C47,C48,C57,C60,C63,C64,C66,C67,C72,C8,C84,C86,D7,D8,D9
Chr7:15294916 G GTA 2bp_insertion frameshift_variant 2 C18,C22
Chr7:15294916 G GTA 2bp_insertion CDS_variant 2 C18,C22
Chr7:15295002 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:15295203 C T EMS_canonical_SNV CDS_variant 2 B1,C2

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057920780.1
GGGCCCGAACTTTTGATGGAGCTCTCTCTCTACAGAGTCATTGTCATGTGAGCTGTGCCCCATTCATATTTTCCCTCTCATCCTTTTCTTCTTGTTTTTGTTTAGGTTCAAGTTCCAACTCTTTCCCTCCTCTTCCTTGCTTCTTCTTCTCTCACTAAAATTCATTTCCCATTTCTACCAAATTTTGTGTCTAATAGGTGTCTCAAATCTCTGTGTTTCTCCGCAGATTTACAAGTGAGTACCAAGGGCAAAAATGGAGA...
XM_057920778.1
AGCTCTCTCTCTACAGAGTCATTGTCATGTGAGCTGTGCCCCATTCATATTTTCCCTCTCATCCTTTTCTTCTTGTTTTTGTTTAGGTTCAAGTTCCAACTCTTTCCCTCCTCTTCCTTGCTTCTTCTTCTCTCACTAAAATTCATTTCCCATTTCTACCAAATTTTGTGTCTAATAGGTGTCTCAAATCTCTGTGTTTCTCCGCAGATTTACAAGGCAAAAATGGAGAATGAAGCGAATTCGCCATCATCAATTCGTAT...

CDS

3 records

下载 CDS FASTA
LOC130995482
ATGGAGAATGAAGCGAATTCGCCATCATCAATTCGTATGGAGAATCGTGAATGGCTAGCAGAGAATATCAAGGGTTTGGATCAAGCTGTCAACGAAATGCAACTGTTGGTTGAGAACCATGGGAAGTTCTCTGTGGAGAATCTTCGAGATGATCAGCTATTGCAGCCTGAATTAATTGCTCGTGTCAAGGAGATCTCCCACAGGCACCATTTGCTTGCTCACCACTACAATGAAACGATGAATTACAAGATAAGTAGTCG...
LOC130995482
ATGGAGAATGAAGCGAATTCGCCATCATCAATTCGTATGGAGAATCGTGAATGGCTAGCAGAGAATATCAAGGGTTTGGATCAAGCTGTCAACGAAATGCAACTGTTGGTTGAGAACCATGGGAAGTTCTCTGTGGAGAATCTTCGAGATGATCAGCTATTGCAGCCTGAATTAATTGCTCGTGTCAAGGAGATCTCCCACAGGCACCATTTGCTTGCTCACCACTACAATGAAACGATGAATTACAAGATAAGTAGTCG...

Protein

3 records

下载 Protein FASTA
XP_057776761.1
MENEANSPSSIRMENREWLAENIKGLDQAVNEMQLLVENHGKFSVENLRDDQLLQPELIARVKEISHRHHLLAHHYNETMNYKISSRLNHPFLTPDKKLGMQNVDAQVVGSDSSLSSGGGISDTTPVEGSESSLMSSDSDSESYNSSPTGKMLKHEFVSLGTEVSETGGMVMKLSDCEKELKVSKEKLFSAEGEIANLKSELLKTEALIAKMGSMEAQLVSAETQIKLQEADMDKETKKSLMLQRQIVGLETELESEKRL...
XP_057776762.1
MENEANSPSSIRMENREWLAENIKGLDQAVNEMQLLVENHGKFSVENLRDDQLLQPELIARVKEISHRHHLLAHHYNETMNYKISSRLNHPFLTPDKKLGMQNVDAQVVGSDSSLSSGGGISDTTPVEGSESSLMSSDSDSESYNSSPTGKMLKHEFVSLGTEVSETGGMVMKLSDCEKELKVSKEKLFSAEGEIANLKSELLKTEALIAKMGSMEAQLVSAETQIKLQEADMDKETKKSLMLQRQIVGLETELESEKRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器