当前解析结果
SmilChr07G001795| 统一新 Gene ID | SmilChr07G001795 |
|---|---|
| 名称 | SmilChr07G001795 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15297715 - 15300434 / + |
| NCBI Gene ID | LOC130993877 |
|---|---|
| GeneID | 130993877 |
| locus_tag | - |
| NCBI Name | LOC130993877 |
| 原始查询 | SmilChr07G001795 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=47.9; qcov=0.984; evalue=1.39e-119; confidence=high |
| Rice | Os01g0769700 (DRUS2)- identity=50.4; qcov=0.916; evalue=1.08e-123; confidence=high |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993877 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774896.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774896.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774896.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774896.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774896.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15297717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:15297733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:15297741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C71 |
Chr7:15297779 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C32,C46,C72,C83 |
Chr7:15297781 |
C |
T |
EMS_canonical_SNV | stop_gained | 32 | A13,B102,B108,B111,B113,B125,B131,B137,B37,B38,B39,B42,B43,B5,B59,B70,B86,B97,C17,C27,C32,C33,C46,C55,C63,C72,C79,C83,C87,D3,D7,D9 |
Chr7:15297793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,A4,B75,C85 |
Chr7:15297799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C18 |
Chr7:15297856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C46 |
Chr7:15297920 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr7:15297923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:15297926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B39,B5,D3 |
Chr7:15297934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,C36,C68,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774896.1PF07714
PK_Tyr_Ser-Thr 169-368 aa
PF00069
Pkinase 169-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774896.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 169 | 368 | 3.5e-44 | 151.8 | Protein tyrosine and serine/threonine kinase |
XP_057774896.1 |
Pfam | PF00069 |
Pkinase | Domain | 169 | 374 | 5.4e-43 | 148.0 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。