当前解析结果
SmilChr07G001802| 统一新 Gene ID | SmilChr07G001802 |
|---|---|
| 名称 | SmilChr07G001802 |
| 描述 | F-box protein At5g07670-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15379060 - 15380988 / - |
| NCBI Gene ID | LOC130995488 |
|---|---|
| GeneID | 130995488 |
| locus_tag | - |
| NCBI Name | LOC130995488 |
| 原始查询 | SmilChr07G001802 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein At5g07670-like |
| 产物 | F-box protein At5g07670-like |
| Arabidopsis | AT5G07670 (AT5G07670)RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830660] identity=57.1; qcov=0.891; evalue=9.23e-170; confidence=high |
| Rice | Os02g0658500 (Os_F0751)- identity=44.2; qcov=0.71; evalue=1.58e-80; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995488 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776773.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057776773.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057776773.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057776773.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057776773.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15379462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C82 |
Chr7:15379708 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,A5,B8,B84 |
Chr7:15379747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,C2,C33 |
Chr7:15379750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr7:15379776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B87,C33 |
Chr7:15379790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:15379805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,D1 |
Chr7:15379830 |
C |
CA |
1bp_insertion | frameshift_variant | 47 | A15,A20,A25,A6,B100,B114,B125,B126,B129,B140,B17,B24,B25,B26,B3,B30,B4,B44,B51,B58,B6,B61,B69,B71,B72,B73,B81,B82,B9,B91,C10,C17,C21,C3,C34,C36,C39,C53,C6,C63,C67,C7,C70,C73,C82,D1,D9 |
Chr7:15379834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B114,B137 |
Chr7:15379881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,C2 |
Chr7:15379897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:15379928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B131 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。