当前解析结果
SmilChr07G001810| 统一新 Gene ID | SmilChr07G001810 |
|---|---|
| 名称 | SmilChr07G001810 |
| 描述 | uncharacterized protein At3g06530 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15481811 - 15498477 / - |
| NCBI Gene ID | LOC130995498 |
|---|---|
| GeneID | 130995498 |
| locus_tag | - |
| NCBI Name | LOC130995498 |
| 原始查询 | SmilChr07G001810 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819831]; symbol=AT3G06530; hit=AT3G06530; species=arabidopsis; confidence=medium |
| 产物 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819831]; symbol=AT3G06530; hit=AT3G06530; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G06530 (AT3G06530)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819831] identity=44.7; qcov=1.04; evalue=0; confidence=medium |
| Rice | Os04g0548300- identity=61; qcov=0.107; evalue=3.19e-87; confidence=weak |
| GO | GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0030515 (snoRNA binding); GO:0030686 (90S preribosome); GO:0032040 (small-subunit processome); GO:0034455 (t-UTP complex); GO:0045943 (positive regulation of transcription by RNA polymerase I) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08146 (BP28CT); PF12397 (U3snoRNP10); PF23243 (HEAT_HEATR1); PF24477 (ARM_At3g06530) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995498 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776783.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057776783.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057776783.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057776783.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057776783.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15482233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B30,C84,D2,D7 |
Chr7:15483027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C2 |
Chr7:15483370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B30,C84,D2,D7 |
Chr7:15483390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:15484414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr7:15484754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr7:15484884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B7,B77,D6 |
Chr7:15484885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:15485019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:15485467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:15485542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:15486015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B30,C84,D2,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776783.1PF12397
U3snoRNP10 234-358 aa
PF24477
ARM_At3g06530 616-811 aa
PF23243
HEAT_HEATR1 1336-1532 aa
PF08146
BP28CT 1824-1992 aa
XP_057776784.1PF12397
U3snoRNP10 234-356 aa
PF24477
ARM_At3g06530 614-809 aa
PF23243
HEAT_HEATR1 1334-1530 aa
PF08146
BP28CT 1822-1990 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776783.1 |
Pfam | PF12397 |
U3snoRNP10 | Family | 234 | 358 | 2.3e-18 | 67.4 | U3 small nucleolar RNA-associated protein 10 |
XP_057776783.1 |
Pfam | PF24477 |
ARM_At3g06530 | Repeat | 616 | 811 | 1e-69 | 234.8 | At3g06530-like, ARM repeats |
XP_057776783.1 |
Pfam | PF23243 |
HEAT_HEATR1 | Repeat | 1336 | 1532 | 1.6e-55 | 188.8 | HEATR1-like, HEAT repeats |
XP_057776783.1 |
Pfam | PF08146 |
BP28CT | Domain | 1824 | 1992 | 9.6e-39 | 133.4 | BP28CT (NUC211) domain |
XP_057776784.1 |
Pfam | PF12397 |
U3snoRNP10 | Family | 234 | 356 | 3.7e-17 | 63.4 | U3 small nucleolar RNA-associated protein 10 |
XP_057776784.1 |
Pfam | PF24477 |
ARM_At3g06530 | Repeat | 614 | 809 | 1e-69 | 234.8 | At3g06530-like, ARM repeats |
XP_057776784.1 |
Pfam | PF23243 |
HEAT_HEATR1 | Repeat | 1334 | 1530 | 1.6e-55 | 188.8 | HEATR1-like, HEAT repeats |
XP_057776784.1 |
Pfam | PF08146 |
BP28CT | Domain | 1822 | 1990 | 9.6e-39 | 133.4 | BP28CT (NUC211) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。