Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001821

染色体: Chr07 坐标: 15711386-15713948 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001821
名称SmilChr07G001821
描述uncharacterized SmilChr07G001821
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向15711386 - 15713948 / +

ID 对照

NCBI Gene IDLOC130995507
GeneID130995507
locus_tag-
NCBI NameLOC130995507
原始查询SmilChr07G001821

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837857]; symbol=AT1G12990; hit=AT1G12990; species=arabidopsis; confidence=high
产物beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837857]; symbol=AT1G12990; hit=AT1G12990; species=arabidopsis; confidence=high
ArabidopsisAT1G12990 (AT1G12990)
beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837857]
identity=78.7; qcov=0.98; evalue=0; confidence=high
RiceOs02g0594900
-
identity=69.7; qcov=0.982; evalue=0; confidence=high
GOGO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity); GO:0006044 (N-acetylglucosamine metabolic process); GO:0006487 (protein N-linked glycosylation); GO:0016020 (membrane)
KEGGsmil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF04724 (Glyco_transf_17)
InterPro-
eggNOG-
NRGeneID:130995507

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057776794.1
2 Golgi stack 高尔基堆 0.20000 XP_057776794.1
3 Nucleus 细胞核 0.00000 XP_057776794.1
4 Chromosome 染色体 0.00000 XP_057776794.1
5 Centromere 着丝粒 0.00000 XP_057776794.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:15711994 G A EMS_canonical_SNV CDS_variant 5 B103,B77,B78,C34,C56
Chr7:15712038 G A EMS_canonical_SNV CDS_variant 3 B20,C42,D5
Chr7:15712666 C T EMS_canonical_SNV CDS_variant 2 B136,B72
Chr7:15712759 C T EMS_canonical_SNV CDS_variant 2 B118,B9
Chr7:15712780 G A EMS_canonical_SNV CDS_variant 2 B108,B131
Chr7:15712825 C T EMS_canonical_SNV CDS_variant 2 C32,C68
Chr7:15712853 G A EMS_canonical_SNV CDS_variant 1 B1
Chr7:15712924 C T EMS_canonical_SNV CDS_variant 1 C8
Chr7:15712984 C T EMS_canonical_SNV CDS_variant 2 B118,C8
Chr7:15713502 G A EMS_canonical_SNV CDS_variant 1 C36
Chr7:15713540 C T EMS_canonical_SNV CDS_variant 2 B136,B72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057776794.1
397 aa
N
1
198
397
Glyco_transf_17
C
PF04724 Glyco_transf_17 50-395 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776794.1 Pfam PF04724 Glyco_transf_17 Family 50 395 3.7e-185 615.7 Glycosyltransferase family 17

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057920811.1
CTCTGTGATTCCTTCAATCTGGATTCCAATTGTATGACCTAATTAAATCACTCCACAAAGCACACGCCATAACACAAGGTTGCTTTTTTGAAAGATAAACAGAAGATTGATTTCTTGAGCAGGTCAATCGACGCGTTAAACAGGGACCAAGCAAGCCTGCATTGAAATGTCAAGAATACCCTTTTCCACTTTCCAAGATCGAAAACATTGAATGGGCTTGTGCGTAAATTGAACCCCAAATATTCCCAACTCGCTAAGAT...

CDS

1 records

下载 CDS FASTA
LOC130995507
ATGTGTAGTGTAACGAGGTTTTGTGAGAAAGTATATACGATGGCGGAAGGGGGATCTAATTATTGTTCCAAGAAGTCTGATGATGTATGTGATGAGGATTCAGGCAAGAGCTTGAGCATAACAAGATTAAAATGCTTTCTGCGCGGGTTGGATGTTAAAGCTTATCTCTTCCTATTCATGTTGATCCCGACATCTCTGTTTTTCATATACGTGCACGGCCAGAAGATCACGTACTTCTTGCGACCGTTGTGGGAATCTCC...

Protein

1 records

下载 Protein FASTA
XP_057776794.1
MCSVTRFCEKVYTMAEGGSNYCSKKSDDVCDEDSGKSLSITRLKCFLRGLDVKAYLFLFMLIPTSLFFIYVHGQKITYFLRPLWESPPKPFHEIPHYYHENVSMENLCKLHGWGIREYPRRVFDAVLFSNELDILKIRWNELYPYVSEFVLLESNSTFTGLPKPFVFAGFRDEFKFLEPRLTYGQVPGRFKKGENPFIEEAYQRLALDYLLKQAGIQDDDLLIMSDVDEIPSRHTINLLRWCDGIPPILHLRLRNYLYSF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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