当前解析结果
SmilChr07G001821| 统一新 Gene ID | SmilChr07G001821 |
|---|---|
| 名称 | SmilChr07G001821 |
| 描述 | uncharacterized SmilChr07G001821 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15711386 - 15713948 / + |
| NCBI Gene ID | LOC130995507 |
|---|---|
| GeneID | 130995507 |
| locus_tag | - |
| NCBI Name | LOC130995507 |
| 原始查询 | SmilChr07G001821 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837857]; symbol=AT1G12990; hit=AT1G12990; species=arabidopsis; confidence=high |
| 产物 | beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837857]; symbol=AT1G12990; hit=AT1G12990; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G12990 (AT1G12990)beta-1,4-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837857] identity=78.7; qcov=0.98; evalue=0; confidence=high |
| Rice | Os02g0594900- identity=69.7; qcov=0.982; evalue=0; confidence=high |
| GO | GO:0003830 (beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity); GO:0006044 (N-acetylglucosamine metabolic process); GO:0006487 (protein N-linked glycosylation); GO:0016020 (membrane) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04724 (Glyco_transf_17) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995507 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057776794.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057776794.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776794.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776794.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15711994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B77,B78,C34,C56 |
Chr7:15712038 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B20,C42,D5 |
Chr7:15712666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,B72 |
Chr7:15712759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B9 |
Chr7:15712780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B131 |
Chr7:15712825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:15712853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr7:15712924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:15712984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C8 |
Chr7:15713502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr7:15713540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776794.1PF04724
Glyco_transf_17 50-395 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776794.1 |
Pfam | PF04724 |
Glyco_transf_17 | Family | 50 | 395 | 3.7e-185 | 615.7 | Glycosyltransferase family 17 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。