Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001845`

染色体: Chr07 坐标: 15960962-15965139 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001845`
名称	SmilChr07G001845
描述	D-cysteine desulfhydrase 2, mitochondrial
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	15960962 - 15965139 / `-`

ID 对照

NCBI Gene ID	`LOC130995528`
GeneID	`130995528`
locus_tag	`-`
NCBI Name	`LOC130995528`
原始查询	`SmilChr07G001845`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述	D-cysteine desulfhydrase 2, mitochondrial
产物	D-cysteine desulfhydrase 2%2C mitochondrial
Arabidopsis	`AT3G26115` (AT3G26115) Pyridoxal-5'-phosphate-dependent enzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:822210] identity=59.5; qcov=0.95; evalue=5.38e-155; confidence=high
Rice	`Os01g0695600` - identity=53.3; qcov=0.476; evalue=7.81e-59; confidence=medium
GO	GO:0019148 (D-cysteine desulfhydrase activity)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00470 (D-Amino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130995528

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057776828.1`
2	Cytosol	细胞质基质	1.00000	`XP_057776830.1`
3	Cytoplasm	细胞质	0.80000	`XP_057776830.1`
4	Mitochondrion matrix	线粒体基质	0.60000	`XP_057776828.1`
5	Nucleus	细胞核	0.00000	`XP_057776828.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:15961223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:15961250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:15961326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B135,B2,B98,C48
`Chr7:15961351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:15962556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr7:15962565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B49,B82,C23,C82
`Chr7:15963493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr7:15963513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B27,C5,D5
`Chr7:15963574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,D5
`Chr7:15963724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,D5
`Chr7:15963726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B131,B56,B96,C72
`Chr7:15964359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057920847.1
TTTCTTGAGAAGTTGGAATATCTACAAAGACACTCCGCCATCTTCGTGTTTTGAAGCGAAAACATGGGACTTCAAATATTGGCCCGAAATTCTGCAATTTCAACTGTCAAAAACGGGATGTCTTGAAGCATTATCTGGTAAATGATGAATCAGTGTTAAAATTATTTGACAGAAGGTGGGCATTGAGCTGCCCTGATGCCAAAATCAATCAGATAATGATTTCAAACCGCAAGGGAGGCGGATCAGTTCGCGAGGGAACC...

XM_057920845.1
TTTCTTGAGAAGTTGGAATATCTACAAAGACACTCCGCCATCTTCGTGTTTTGAAGCGAAAACATGGGACTTCAAATATTGGCCCGAAATTCTGCAATTTCAACTGTCAAAAACGGGTACTTCCCCAATACCTACCAGGATGTCTTGAAGCATTATCTGGTAAATGATGAATCAGTGTTAAAATTATTTGACAGAAGGTGGGCATTGAGCTGCCCTGATGCCAAAATCAATCAGATAATGATTTCAAACCGCAAGGGAGG...

CDS

4 records

下载 CDS FASTA

LOC130995528
ATGGGACTTCAAATATTGGCCCGAAATTCTGCAATTTCAACTGTCAAAAACGGAAGGTGGGCATTGAGCTGCCCTGATGCCAAAATCAATCAGATAATGATTTCAAACCGCAAGGGAGGCGGATCAGTTCGCGAGGGAACCAGTTCATATCGAAACATCACCCTACCATGCCTTGGTGAAGGCATGATTGGGAATAAGAAGAATTTTTCATCATTCTATGTGGTGAGGGATGATTTGTTGCATCCTCTGGTAAATGGTAA...

LOC130995528
ATGGGACTTCAAATATTGGCCCGAAATTCTGCAATTTCAACTGTCAAAAACGGGTACTTCCCCAATACCTACCAGGATGTCTTGAAGCATTATCTGGTAAATGATGAATCAGTGTTAAAATTATTTGACAGAAGGTGGGCATTGAGCTGCCCTGATGCCAAAATCAATCAGATAATGATTTCAAACCGCAAGGGAGGCGGATCAGTTCGCGAGGGAACCAGTTCATATCGAAACATCACCCTACCATGCCTTGGTGAAGG...

Protein

4 records

下载 Protein FASTA

XP_057776828.1
MGLQILARNSAISTVKNGYFPNTYQDVLKHYLVNDESVLKLFDRRWALSCPDAKINQIMISNRKGGGSVREGTSSYRNITLPCLGEGMIGNKKNFSSFYVVRDDLLHPLVNGNKSRKLDALLPVLEDNAVTGVVTCGGCQSAHAAAVAVSCAERGLKAHILLRGEEPETLTGYNLVSKLYGDVVYVPRSVYAKREEMLAKHAESIVGADGSILWLNDVVEASVKHHESTVQNFPEADLVNCHKKPEKVAIINEGAGDAVA...

XP_057776829.1
MGLQILARNSAISTVKNGRWALSCPDAKINQIMISNRKGGGSVREGTSSYRNITLPCLGEGMIGNKKNFSSFYVVRDDLLHPLVNGNKSRKLDALLPVLEDNAVTGVVTCGGCQSAHAAAVAVSCAERGLKAHILLRGEEPETLTGYNLVSKLYGDVVYVPRSVYAKREEMLAKHAESIVGADGSILWLNDVVEASVKHHESTVQNFPEADLVNCHKKPEKVAIINEGAGDAVALLGVMRLIKYLSQKHLFGKEQAMKIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器