当前解析结果
SmilChr07G001846| 统一新 Gene ID | SmilChr07G001846 |
|---|---|
| 名称 | SmilChr07G001846 |
| 描述 | oxysterol-binding protein-related protein 1D |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 15977637 - 15983904 / - |
| NCBI Gene ID | LOC130995529 |
|---|---|
| GeneID | 130995529 |
| locus_tag | - |
| NCBI Name | LOC130995529 |
| 原始查询 | SmilChr07G001846 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | oxysterol-binding protein-related protein 1D |
| 产物 | oxysterol-binding protein-related protein 1D |
| Arabidopsis | AT1G13170 (ORP1D)OSBP(oxysterol binding protein)-related protein 1D [Source:NCBI gene (formerly Entrezgene);Acc:837875] identity=71.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os12g0285600- identity=66.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005829 (cytosol); GO:0015248 (GO:0015248); GO:0016020 (membrane); GO:0032934 (sterol binding); GO:0043231 (intracellular membrane-bounded organelle) |
| KEGG | - |
| Pfam | PF00169 (PH); PF01237 (Oxysterol_BP); PF15413 (PH_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995529 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057776832.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057776832.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057776833.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057776832.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057776832.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:15977828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B136,B65,C60,D7 |
Chr7:15977889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,C5 |
Chr7:15979561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C79,D9 |
Chr7:15980898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A5,B8,C58 |
Chr7:15981075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B126,C60,C61 |
Chr7:15981278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A5,B8,C58 |
Chr7:15981837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:15981933 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B51 |
Chr7:15981933 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B51 |
Chr7:15981989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:15982926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B124,B43,B67,B76,C76 |
Chr7:15983109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776832.1PF00169
PH 87-218 aa
PF15413
PH_11 88-220 aa
PF01237
Oxysterol_BP 435-788 aa
XP_057776833.1PF00169
PH 87-218 aa
PF15413
PH_11 88-220 aa
PF01237
Oxysterol_BP 435-755 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776832.1 |
Pfam | PF00169 |
PH | Domain | 87 | 218 | 1.6e-10 | 42.2 | PH domain |
XP_057776832.1 |
Pfam | PF15413 |
PH_11 | Domain | 88 | 220 | 1.8e-15 | 58.0 | Pleckstrin homology domain |
XP_057776832.1 |
Pfam | PF01237 |
Oxysterol_BP | Family | 435 | 788 | 6.1e-127 | 424.2 | Oxysterol-binding protein |
XP_057776833.1 |
Pfam | PF00169 |
PH | Domain | 87 | 218 | 3.5e-11 | 44.3 | PH domain |
XP_057776833.1 |
Pfam | PF15413 |
PH_11 | Domain | 88 | 220 | 1.6e-15 | 58.1 | Pleckstrin homology domain |
XP_057776833.1 |
Pfam | PF01237 |
Oxysterol_BP | Family | 435 | 755 | 1.4e-117 | 393.4 | Oxysterol-binding protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。