Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001856`

染色体: Chr07 坐标: 16088024-16090680 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001856`
名称	SmilChr07G001856
描述	very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16088024 - 16090680 / `-`

ID 对照

NCBI Gene ID	`LOC130995542`
GeneID	`130995542`
locus_tag	`-`
NCBI Name	`LOC130995542`
原始查询	`SmilChr07G001856`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470
产物	very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470
Arabidopsis	`AT1G24470` (KCR2) beta-ketoacyl reductase 2 [Source:NCBI gene (formerly Entrezgene);Acc:839063] identity=59.9; qcov=0.961; evalue=2.77e-128; confidence=high
Rice	`Os11g0432600` - identity=50.6; qcov=1.02; evalue=7.53e-109; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0045703 (ketoreductase activity)
KEGG	smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130995542

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057776851.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057776851.1`
3	Nucleus	细胞核	0.00000	`XP_057776851.1`
4	Chromosome	染色体	0.00000	`XP_057776851.1`
5	Centromere	着丝粒	0.00000	`XP_057776851.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16088292`	`A`	`AG`	1bp_insertion	frameshift_variant	1	B1
`Chr7:16088292`	`A`	`AG`	1bp_insertion	CDS_variant	1	B1
`Chr7:16088298`	`G`	`GT`	1bp_insertion	frameshift_variant	47	A1,A14,A15,A19,A7,B10,B103,B106,B124,B126,B127,B130,B132,B19,B30,B32,B36,B42,B43,B44,B48,B64,B67,B71,B76,B84,B88,B95,C12,C15,C16,C17,C21,C25,C26,C29,C3,C33,C47,C54,C57,C71,C73,C76,C8,C86,D1
`Chr7:16088306`	`TG`	`T`	1bp_deletion	frameshift_variant	5	A21,B115,B124,B20,D5
`Chr7:16088306`	`TG`	`T`	1bp_deletion	CDS_variant	5	A21,B115,B124,B20,D5
`Chr7:16088332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr7:16088460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr7:16088462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,A5,B8,C58
`Chr7:16089894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B101
`Chr7:16090096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B52,B98,C55
`Chr7:16090162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr7:16090220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B86,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776851.1

306 aa

153

306

adh_short

adh_short_C2

PF08659 KR 43-208 aa PF00106 adh_short 43-236 aa PF13561 adh_short_C2 50-238 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776851.1`	Pfam	`PF08659`	KR	Family	43	208	1.4e-06	29.0	KR domain
`XP_057776851.1`	Pfam	`PF00106`	adh_short	Domain	43	236	3.5e-39	135.0	short chain dehydrogenase
`XP_057776851.1`	Pfam	`PF13561`	adh_short_C2	Domain	50	238	2.9e-22	80.1	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920868.1
CCATCAATGGGGAAATACTTTTATTGGTGTAATAATAATATACGAGGAAAACGTGGAGCTAGGTTGTTGTATCCATTGAACACAAGCCATGTAAGTATATATTTCTCATTTCTAGACACTTGTTATACATTAAAACCATCTTGCATCTCTCTCACAAGAACAAGATGACGTGGATCATTCTAGTTTCGTGCATCGGCTTCGTCTGCCTCTTGAAGAATCTAACCTCCCTTGTGAGATGGATCCTCAACCTGCTTCTCCGA...

CDS

1 records

下载 CDS FASTA

LOC130995542
ATGACGTGGATCATTCTAGTTTCGTGCATCGGCTTCGTCTGCCTCTTGAAGAATCTAACCTCCCTTGTGAGATGGATCCTCAACCTGCTTCTCCGACCCGCAAAGGATCTCACGAGTTACGGCTCCTGGGCTCTCGTCACTGGTTCCACCGATGGAATCGGGAAAGCCTTTGCTTTCAAACTGGCCGCCCTCGGCCTCAACCTAGTCCTGCTCAGCAGGAACTCCGCAAAGCTCAAAACGGTCTCCGCCCAAATCCAGGC...

Protein

1 records

下载 Protein FASTA

XP_057776851.1
MTWIILVSCIGFVCLLKNLTSLVRWILNLLLRPAKDLTSYGSWALVTGSTDGIGKAFAFKLAALGLNLVLLSRNSAKLKTVSAQIQASFPHIKIKVFELDFSSGDVGPAQLKEAVKGLDIGVLINNVGVTYPRPMYFHEVDDQVWMNLVRVNLQGTTHVTRAVIAGMIHRGRGAILNIGSGASVVVPSHPLYAIYAATKAYVDQLSRSLYVEYKHYGIDIQCQVPLYVSTRMASEVAYVEKSTIFIPTAERYVEAAVKWI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器