Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001857`

染色体: Chr07 坐标: 16093324-16096204 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001857`
名称	SmilChr07G001857
描述	uncharacterized SmilChr07G001857
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16093324 - 16096204 / `-`

ID 对照

NCBI Gene ID	`LOC130995543`
GeneID	`130995543`
locus_tag	`-`
NCBI Name	`LOC130995543`
原始查询	`SmilChr07G001857`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CAAX amino terminal protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822206]; symbol=AT3G26085; hit=AT3G26085; species=arabidopsis; confidence=high
产物	CAAX amino terminal protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822206]; symbol=AT3G26085; hit=AT3G26085; species=arabidopsis; confidence=high
Arabidopsis	`AT3G26085` (AT3G26085) CAAX amino terminal protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822206] identity=68.8; qcov=0.94; evalue=4.22e-96; confidence=high
Rice	`Os05g0295200` - identity=47.4; qcov=0.261; evalue=1.29e-09; confidence=weak
GO	GO:0004222 (metalloendopeptidase activity); GO:0016020 (membrane); GO:0071586 (CAAX-box protein processing)
KEGG	-
Pfam	PF02517 (Rce1-like)
InterPro	-
eggNOG	-
NR	GeneID:130995543

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776852.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057776852.1`
3	Nucleus	细胞核	0.00000	`XP_057776852.1`
4	Chromosome	染色体	0.00000	`XP_057776852.1`
5	Centromere	着丝粒	0.00000	`XP_057776852.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16093555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B65,C60,D7
`Chr7:16093636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:16093888`	`CA`	`C`	1bp_deletion	frameshift_variant	5	A3,B25,B54,B56,B96
`Chr7:16093888`	`CA`	`C`	1bp_deletion	CDS_variant	5	A3,B25,B54,B56,B96
`Chr7:16093930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16093932`	`TC`	`T`	1bp_deletion	frameshift_variant	101	A1,A10,A15,A18,A22,A25,B10,B106,B107,B108,B11,B115,B117,B118,B119,B123,B124,B125,B130,B132,B134,B135,B136,B14,B17,B19,B22,B24,B25,B33,B36,B38,B39,B4,B40,B44,B46,B49,B5,B56,B61,B62,B63,B67,B69,B70,B71,B74,B76,B77,B78,B81,B83,B87,B9,B90,B91,B93,B96,B97,C1,C12,C14,C18,C23,C24,C25,C26,C27,C29,C30,C31,C32,C35,C36,C37,C42,C43,C47,C50,C55,C56,C57,C62,C63,C64,C65,C66,C70,C71,C72,C73,C75,C78,C8,C87,D1,D10,D4,D6,D9
`Chr7:16093934`	`C`	`T`	EMS_canonical_SNV	stop_gained	12	A5,B108,B112,B113,B126,B23,B3,B46,C29,C58,C70,D6
`Chr7:16093943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B63,B83
`Chr7:16093966`	`A`	`AG`	1bp_insertion	frameshift_variant	3	B54,B8,C80
`Chr7:16093966`	`A`	`AG`	1bp_insertion	CDS_variant	3	B54,B8,C80
`Chr7:16093967`	`C`	`CT`	1bp_insertion	frameshift_variant	8	A10,B117,B130,B62,B69,C30,D2,D8
`Chr7:16094621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776852.1

218 aa

109

218

Rce1-like

PF02517 Rce1-like 116-203 aa

XP_057776853.1

218 aa

109

218

Rce1-like

PF02517 Rce1-like 116-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776852.1`	Pfam	`PF02517`	Rce1-like	Family	116	203	5.4e-17	62.6	Type II CAAX prenyl endopeptidase Rce1-like
`XP_057776853.1`	Pfam	`PF02517`	Rce1-like	Family	116	203	5.4e-17	62.6	Type II CAAX prenyl endopeptidase Rce1-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920869.1
CAAAGACCCTCTAGAAAAATAAATAAACAAAAATATTTTGAAGACATGCGATGTTCAATCTTCCATCAGAATTAAGGTTGCATTGAGAGAGTAGATACACATGGATTTGCTCAACCCCAACTGCTTCTTTCGGCTAAAATCTTGCAATCTTCACATGCCGTCTCCGTCCCGATTCCTCGGAAGAGATATACATATTTGTCGAAAGTTCTCCACCAAATTATGCTCTAGATATGGAGGTTGTATAAGAGCTTTGGCTAGTC...

XM_057920870.1
AATAAATAAACAAAAATATTTTGAAGACATGCGATGTTCAATCTTCCATCAGAATTAAGGTTGCATTGAGAGAGTAGATACACATGGATTTGCTCAACCCCAACTGCTTCTTTCGGCTAAAATCTTGCAATCTTCACATGCCGTCTCCGTCCCGATTCCTCGGAAGAGATATACATATTTGTCGAAAGTTCTCCACCAAATTATGCTCTACTTGTTTTTATTTTCTTGTCATTTTCATCTCTAAAGAGATATGGAGGTTG...

CDS

2 records

下载 CDS FASTA

LOC130995543
ATGAAAATGAAGCTAAGACTGTCTTCTTCTGAAACTGATGAAGTTCAGCCTTTAGTTGTAGTCCCATCGAGGAGTGCTGTGCTTCAAGCATGCACTTTCACTTCTGCTTCCATAGCTGCTTTGGGGCTTTTCATTAGGCAGGTTTCTCATTTTGCATCGAGAGAGGGATGGCCTGTTCTTGACTGTTCTGAGGATATAACTTTTAGTTTCGAGTCATGGCATTTTGGATTGATTATGGGATCAGTTATTCTGGTATCATC...

Protein

2 records

下载 Protein FASTA

XP_057776852.1
MKMKLRLSSSETDEVQPLVVVPSRSAVLQACTFTSASIAALGLFIRQVSHFASREGWPVLDCSEDITFSFESWHFGLIMGSVILVSSCRLLLLRIWPDFAESSKAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGINWMSIFAVAALFGVLHLGSGRKSSFAVWATFVGIVYGYATSLSSSIAVPMASHALNNLVGGVSWRLSSDSLKAD

XP_057776853.1
MKMKLRLSSSETDEVQPLVVVPSRSAVLQACTFTSASIAALGLFIRQVSHFASREGWPVLDCSEDITFSFESWHFGLIMGSVILVSSCRLLLLRIWPDFAESSKAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGINWMSIFAVAALFGVLHLGSGRKSSFAVWATFVGIVYGYATSLSSSIAVPMASHALNNLVGGVSWRLSSDSLKAD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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