当前解析结果
SmilChr07G001870| 统一新 Gene ID | SmilChr07G001870 |
|---|---|
| 名称 | SmilChr07G001870 |
| 描述 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16184354 - 16190049 / - |
| NCBI Gene ID | LOC130995558 |
|---|---|
| GeneID | 130995558 |
| locus_tag | - |
| NCBI Name | LOC130995558 |
| 原始查询 | SmilChr07G001870 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like |
| 产物 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like |
| Arabidopsis | AT3G26020 (AT3G26020)Protein phosphatase 2A regulatory B subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:822199] identity=75.9; qcov=0.887; evalue=0; confidence=high |
| Rice | Os04g0485100 (OsPP2A-B'eta)- identity=68.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0000159 (protein phosphatase type 2A complex); GO:0007165 (signal transduction); GO:0019888 (protein phosphatase regulator activity) |
| KEGG | smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01603 (B56) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995558 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057776870.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057776870.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057776870.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776870.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776870.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16184732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:16188231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B30,B34,B51,C37 |
Chr7:16188234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C11,C13,C65,C69 |
Chr7:16188789 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,C72 |
Chr7:16188972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:16189035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B30,B34,B51,C37 |
Chr7:16189044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776870.1PF01603
B56 85-496 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776870.1 |
Pfam | PF01603 |
B56 | Repeat | 85 | 496 | 2.4e-186 | 620.4 | Protein phosphatase 2A regulatory B subunit (B56 family) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。