Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001898`

染色体: Chr07 坐标: 16400611-16403971 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001898`
名称	SmilChr07G001898
描述	uncharacterized SmilChr07G001898
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16400611 - 16403971 / `-`

ID 对照

NCBI Gene ID	`LOC130995585`
GeneID	`130995585`
locus_tag	`-`
NCBI Name	`LOC130995585`
原始查询	`SmilChr07G001898`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os10g0468250; species=rice; confidence=medium
产物	hit=Os10g0468250; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=34; qcov=0.834; evalue=1.03e-57; confidence=low
Rice	`Os10g0468250` - identity=40.6; qcov=0.899; evalue=2.64e-75; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:130995585

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776914.1`
2	Chromosome	染色体	0.40000	`XP_057776921.1`
3	Telomere	端粒	0.20000	`XP_057776914.1`
4	Centromere	着丝粒	0.00000	`XP_057776914.1`
5	Chromatin	染色质	0.00000	`XP_057776914.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16400782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B25,C50,D8
`Chr7:16401117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B86,C76
`Chr7:16401118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B26,B64,C83,D11
`Chr7:16401120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B26,B64,C83
`Chr7:16401356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16401370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16401693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776914.1

402 aa

201

402

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 71-149 aa PF04827 Plant_tran 173-345 aa PF13359 DDE_Tnp_4 181-342 aa PF01609 DDE_Tnp_1 195-340 aa

XP_057776915.1

402 aa

201

402

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 71-149 aa PF04827 Plant_tran 173-345 aa PF13359 DDE_Tnp_4 181-342 aa PF01609 DDE_Tnp_1 195-340 aa

XP_057776916.1

402 aa

201

402

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 71-149 aa PF04827 Plant_tran 173-345 aa PF13359 DDE_Tnp_4 181-342 aa PF01609 DDE_Tnp_1 195-340 aa

XP_057776918.1

402 aa

201

402

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 71-149 aa PF04827 Plant_tran 173-345 aa PF13359 DDE_Tnp_4 181-342 aa PF01609 DDE_Tnp_1 195-340 aa

XP_057776919.1

402 aa

201

402

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 71-149 aa PF04827 Plant_tran 173-345 aa PF13359 DDE_Tnp_4 181-342 aa PF01609 DDE_Tnp_1 195-340 aa

XP_057776920.1

402 aa

201

402

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 71-149 aa PF04827 Plant_tran 173-345 aa PF13359 DDE_Tnp_4 181-342 aa PF01609 DDE_Tnp_1 195-340 aa

XP_057776921.1

367 aa

184

367

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 36-114 aa PF04827 Plant_tran 138-310 aa PF13359 DDE_Tnp_4 146-307 aa PF01609 DDE_Tnp_1 160-305 aa

XP_057776922.1

367 aa

184

367

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 36-114 aa PF04827 Plant_tran 138-310 aa PF13359 DDE_Tnp_4 146-307 aa PF01609 DDE_Tnp_1 160-305 aa

XP_057776923.1

367 aa

184

367

DUF8040

Plant_tran

DDE_Tnp_4

DDE_Tnp_1

PF26138 DUF8040 36-114 aa PF04827 Plant_tran 138-310 aa PF13359 DDE_Tnp_4 146-307 aa PF01609 DDE_Tnp_1 160-305 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776914.1`	Pfam	`PF26138`	DUF8040	Domain	71	149	1.2e-22	80.3	Domain of unknown function (DUF8040)
`XP_057776914.1`	Pfam	`PF04827`	Plant_tran	Family	173	345	3e-05	24.4	Plant transposon protein
`XP_057776914.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.4e-23	83.2	DDE superfamily endonuclease
`XP_057776914.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	340	1e-06	29.4	Transposase DDE domain
`XP_057776915.1`	Pfam	`PF26138`	DUF8040	Domain	71	149	1.2e-22	80.3	Domain of unknown function (DUF8040)
`XP_057776915.1`	Pfam	`PF04827`	Plant_tran	Family	173	345	3e-05	24.4	Plant transposon protein
`XP_057776915.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.4e-23	83.2	DDE superfamily endonuclease
`XP_057776915.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	340	1e-06	29.4	Transposase DDE domain
`XP_057776916.1`	Pfam	`PF26138`	DUF8040	Domain	71	149	1.2e-22	80.3	Domain of unknown function (DUF8040)
`XP_057776916.1`	Pfam	`PF04827`	Plant_tran	Family	173	345	3e-05	24.4	Plant transposon protein
`XP_057776916.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.4e-23	83.2	DDE superfamily endonuclease
`XP_057776916.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	340	1e-06	29.4	Transposase DDE domain
`XP_057776918.1`	Pfam	`PF26138`	DUF8040	Domain	71	149	1.2e-22	80.3	Domain of unknown function (DUF8040)
`XP_057776918.1`	Pfam	`PF04827`	Plant_tran	Family	173	345	3e-05	24.4	Plant transposon protein
`XP_057776918.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.4e-23	83.2	DDE superfamily endonuclease
`XP_057776918.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	340	1e-06	29.4	Transposase DDE domain
`XP_057776919.1`	Pfam	`PF26138`	DUF8040	Domain	71	149	1.2e-22	80.3	Domain of unknown function (DUF8040)
`XP_057776919.1`	Pfam	`PF04827`	Plant_tran	Family	173	345	3e-05	24.4	Plant transposon protein
`XP_057776919.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.4e-23	83.2	DDE superfamily endonuclease
`XP_057776919.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	340	1e-06	29.4	Transposase DDE domain
`XP_057776920.1`	Pfam	`PF26138`	DUF8040	Domain	71	149	1.2e-22	80.3	Domain of unknown function (DUF8040)
`XP_057776920.1`	Pfam	`PF04827`	Plant_tran	Family	173	345	3e-05	24.4	Plant transposon protein
`XP_057776920.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	2.4e-23	83.2	DDE superfamily endonuclease
`XP_057776920.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	340	1e-06	29.4	Transposase DDE domain
`XP_057776921.1`	Pfam	`PF26138`	DUF8040	Domain	36	114	1e-22	80.5	Domain of unknown function (DUF8040)
`XP_057776921.1`	Pfam	`PF04827`	Plant_tran	Family	138	310	2.4e-05	24.8	Plant transposon protein
`XP_057776921.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	146	307	2e-23	83.5	DDE superfamily endonuclease
`XP_057776921.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	160	305	8.7e-07	29.6	Transposase DDE domain
`XP_057776922.1`	Pfam	`PF26138`	DUF8040	Domain	36	114	1e-22	80.5	Domain of unknown function (DUF8040)
`XP_057776922.1`	Pfam	`PF04827`	Plant_tran	Family	138	310	2.4e-05	24.8	Plant transposon protein
`XP_057776922.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	146	307	2e-23	83.5	DDE superfamily endonuclease
`XP_057776922.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	160	305	8.7e-07	29.6	Transposase DDE domain
`XP_057776923.1`	Pfam	`PF26138`	DUF8040	Domain	36	114	1e-22	80.5	Domain of unknown function (DUF8040)
`XP_057776923.1`	Pfam	`PF04827`	Plant_tran	Family	138	310	2.4e-05	24.8	Plant transposon protein
`XP_057776923.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	146	307	2e-23	83.5	DDE superfamily endonuclease
`XP_057776923.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	160	305	8.7e-07	29.6	Transposase DDE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057920932.1
TAAGCCCCCTGGTTGTTTGGTATCCCTTATTCTAACCTGCAAGCCCTTCACTAATTTATGGCCCGGTCCAATTTCACTAGGCTGTATCCTCCAATAAAACTTCCATTCTCAATTTAGCCCTAGCACACCCTTGAACGATGCCCTCTTTTCTACAGTCAAACAATGCTGTTTTCGATCTGCAAGTGCTATAGCTATGCGATGAAATAAAAAATTCAGCAGGAGAAGCTGAACACAAGACAAAAGAAGATAATAATCAGTAT...

XM_057920940.1
AAGCCCCCTGGTTGTTTGGTATCCCTTATTCTAACCTGCAAGCCCTTCACTAATTTATGGCCCGGTCCAATTTCACTAGGCTGTATCCTCCAATAAAACTTCCATTCTCAATTTAGCCCTAGCACACCCTTGAACGATGCCCTCTTTTCTACAGTCAAACAATGCTGTTTTCGATCTGCAAGTGCTATAGCTATGCGATGAAATAAAAAATTCAGCAGCTGAACACAAGACAAAAGAAGATAATAATCAGTATTAGTTCG...

CDS

9 records

下载 CDS FASTA

LOC130995585
ATGATGCACAATCCTATTGAACCTGCACAAATTGTGTTACTGATAGAGGAGATAATGCATGTGTATTTGATGGAACTCATATGTGTAATGGATCTTATAACTAGGATGGACAAAAGAAAGAGGAAGCGTACTGATGAAGTTGAGACATATTCTATGATTCAAAGAATCCCTGACCAAGTTAAGCGCTTGAACAGAATGGTAGGAGTTACTGATATTGATTGCATTGAAAATCTTCGCATGGATCGTAACACTTTCGGTAG...

Protein

9 records

下载 Protein FASTA

XP_057776914.1
MMHNPIEPAQIVLLIEEIMHVYLMELICVMDLITRMDKRKRKRTDEVETYSMIQRIPDQVKRLNRMVGVTDIDCIENLRMDRNTFGRLCLLLRQLGGLTDGKYVSVEEQVAMFVTTLAHHQKNRIVSSNFWRSGQTVSHYLHVVLRGILKLHGIFLAKPEPVAEDSNDPNWKWFKGCLGALDGIYINVVVPNIDKPRYRTRKGEICMNTLAVCDQNMKFVYVLSGWEGSAADSRVLRDAVNRVHGLKVPRGNYYLCDNDY...

XP_057776915.1
MMHNPIEPAQIVLLIEEIMHVYLMELICVMDLITRMDKRKRKRTDEVETYSMIQRIPDQVKRLNRMVGVTDIDCIENLRMDRNTFGRLCLLLRQLGGLTDGKYVSVEEQVAMFVTTLAHHQKNRIVSSNFWRSGQTVSHYLHVVLRGILKLHGIFLAKPEPVAEDSNDPNWKWFKGCLGALDGIYINVVVPNIDKPRYRTRKGEICMNTLAVCDQNMKFVYVLSGWEGSAADSRVLRDAVNRVHGLKVPRGNYYLCDNDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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