当前解析结果
SmilChr07G001915| 统一新 Gene ID | SmilChr07G001915 |
|---|---|
| 名称 | SmilChr07G001915 |
| 描述 | F-box/kelch-repeat protein At5g26960-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16551988 - 16552485 / - |
| NCBI Gene ID | LOC130993890 |
|---|---|
| GeneID | 130993890 |
| locus_tag | - |
| NCBI Name | LOC130993890 |
| 原始查询 | SmilChr07G001915 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At5g26960-like |
| 产物 | F-box/kelch-repeat protein At5g26960-like |
| Arabidopsis | AT5G26960 (AT5G26960)Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832754] identity=34.3; qcov=1.2; evalue=1.09e-24; confidence=low |
| Rice | Os11g0138700 (OsFbox566)- identity=31.7; qcov=1.21; evalue=6.99e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993890 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774909.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057774909.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774909.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774909.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774909.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16552005 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B93 |
Chr7:16552005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:16552056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:16552100 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | A16,B1,B102,B104,B136,B139,B41,B65,B73,B75,C3,C7,C84 |
Chr7:16552113 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B103,B140,C28,D11 |
Chr7:16552113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B140,C28,D11 |
Chr7:16552116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B99,C1,C20,C32,C68 |
Chr7:16552120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,B46,C30,D2 |
Chr7:16552146 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | A9,B53 |
Chr7:16552146 |
TC |
T |
1bp_deletion | CDS_variant | 2 | A9,B53 |
Chr7:16552167 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A6,B125,B129,B138,B139,B19,B31,B46,B83,C30,C35,C5,D2 |
Chr7:16552186 |
G |
GAA |
2bp_insertion | frameshift_variant | 4 | B123,B52,B66,B86 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。