当前解析结果
SmilChr07G001932| 统一新 Gene ID | SmilChr07G001932 |
|---|---|
| 名称 | SmilChr07G001932 |
| 描述 | uncharacterized SmilChr07G001932 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16732461 - 16733150 / - |
| NCBI Gene ID | LOC130993894 |
|---|---|
| GeneID | 130993894 |
| locus_tag | - |
| NCBI Name | LOC130993894 |
| 原始查询 | SmilChr07G001932 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0204200; species=rice; confidence=low |
| 产物 | hit=Os04g0204200; species=rice; confidence=low |
| Arabidopsis | AT1G40390 (AT1G40390)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840761] identity=27.2; qcov=0.69; evalue=9.76e-10; confidence=low |
| Rice | Os04g0204200- identity=30.5; qcov=0.76; evalue=3.09e-11; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993894 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774912.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057774912.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057774912.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774912.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774912.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16732495 |
C |
CG |
1bp_insertion | frameshift_variant | 58 | A16,A18,A25,A5,A6,B10,B100,B107,B11,B112,B114,B121,B125,B129,B13,B14,B17,B22,B24,B33,B37,B44,B5,B50,B59,B61,B62,B65,B68,B72,B73,B76,B78,B82,B85,B89,B94,C14,C16,C27,C3,C30,C37,C38,C42,C44,C49,C5,C50,C53,C58,C59,C6,C60,C62,C72,C82,D2 |
Chr7:16732554 |
TG |
T |
1bp_deletion | frameshift_variant | 12 | B132,B138,B31,B34,B7,B91,C15,C19,C21,C31,C52,D8 |
Chr7:16732609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:16732634 |
TG |
T |
1bp_deletion | frameshift_variant | 26 | A6,B109,B113,B120,B134,B14,B19,B38,B39,B73,B77,B80,B83,B97,C11,C21,C31,C33,C63,C68,C69,C72,C76,C8,D11,D9 |
Chr7:16732637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:16732643 |
AT |
A |
1bp_deletion | frameshift_variant | 24 | A3,A6,B109,B113,B120,B134,B14,B19,B38,B39,B73,B77,B80,B97,C11,C21,C33,C63,C68,C69,C72,C8,D11,D9 |
Chr7:16732645 |
GAT |
G |
2bp_deletion | frameshift_variant | 23 | A3,A6,B109,B113,B120,B134,B14,B19,B38,B39,B73,B77,B80,B97,C11,C21,C33,C63,C68,C69,C72,C8,D11 |
Chr7:16732650 |
C |
CG |
1bp_insertion | frameshift_variant | 22 | A3,A6,B109,B113,B120,B134,B14,B19,B39,B73,B77,B80,B97,C11,C21,C33,C63,C69,C72,C73,C8,D11 |
Chr7:16732652 |
A |
AAG |
2bp_insertion | frameshift_variant | 22 | A3,A6,B109,B113,B120,B134,B14,B19,B39,B73,B77,B80,B97,C11,C21,C33,C63,C69,C72,C73,C8,D11 |
Chr7:16732687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:16732752 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr7:16732754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,C48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。