Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001941`

染色体: Chr07 坐标: 16830134-16834592 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001941`
名称	SmilChr07G001941
描述	uncharacterized SmilChr07G001941
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	16830134 - 16834592 / `+`

ID 对照

NCBI Gene ID	`LOC130995620`
GeneID	`130995620`
locus_tag	`-`
NCBI Name	`LOC130995620`
原始查询	`SmilChr07G001941`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SH-H; symbol=SH-H; hit=Os07g0207700; species=rice; confidence=high
产物	SH-H; symbol=SH-H; hit=Os07g0207700; species=rice; confidence=high
Arabidopsis	`AT5G11860` (SSP5) SCP1-like small phosphatase 5 [Source:NCBI gene (formerly Entrezgene);Acc:831059] identity=78.4; qcov=0.622; evalue=6.44e-145; confidence=high
Rice	`Os07g0207700` (SH-H) - identity=53; qcov=1.06; evalue=7.98e-153; confidence=high
GO	GO:0004721 (phosphoprotein phosphatase activity)
KEGG	-
Pfam	PF03031 (NIF)
InterPro	-
eggNOG	-
NR	GeneID:130995620

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776959.1`
2	Cytosol	细胞质基质	0.40000	`XP_057776961.1`
3	Cytoplasm	细胞质	0.20000	`XP_057776959.1`
4	Chromosome	染色体	0.00000	`XP_057776959.1`
5	Centromere	着丝粒	0.00000	`XP_057776959.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:16831299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,A7,B51,B8,C80
`Chr7:16831302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr7:16832405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B26,B97,C83
`Chr7:16833654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:16833740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:16834211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B57,C28,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776959.1

432 aa

216

432

NIF

PF03031 NIF 243-402 aa

XP_057776960.1

432 aa

216

432

NIF

PF03031 NIF 243-402 aa

XP_057776961.1

431 aa

216

431

NIF

PF03031 NIF 242-401 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776959.1`	Pfam	`PF03031`	NIF	Family	243	402	2e-59	200.6	NLI interacting factor-like phosphatase
`XP_057776960.1`	Pfam	`PF03031`	NIF	Family	243	402	2e-59	200.6	NLI interacting factor-like phosphatase
`XP_057776961.1`	Pfam	`PF03031`	NIF	Family	242	401	2.1e-59	200.5	NLI interacting factor-like phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920976.1
GTATTATGCGGAAAACAACAGTAATTTCATTTCAAACCATTTCTTCGACCAAAGAAAAATGAAAAAAGAAAATAGAAAGCTTTTTCGATCTCTTTTCATTTCCCTCTAATTTTTTCTATTCTCTAATCTTTGGAGGGAAAGAAAAAGTTTTAATTTCCTCTTGAAAATTTCTTCAATTTGAACTGAGCTTACAAAAGAAATTGGCCACTCTCTTTTTAGTTAATTGCTTTCAGCTGCTCACTTTCTTGATCTTGCAGATT...

XM_057920978.1
AAAACAACAGTAATTTCATTTCAAACCATTTCTTCGACCAAAGAAAAATGAAAAAAGAAAATAGAAAGCTTTTTCGATCTCTTTTCATTTCCCTCTAATTTTTTCTATTCTCTAATCTTTGGAGGGAAAGAAAAAGTTTTAATTTCCTCTTGAAAATTTCTTCAATTTGAACTGAGCTTACAAAAGAAATTGGCCACTCTCTTTTTAGTTAATTGCTTTCAGCTGCTCACTTTCTTGATCTTGCAGATTTTGAATTCCAG...

CDS

3 records

下载 CDS FASTA

LOC130995620
ATGCAGACCAAGAAAAGAGCAACTGGTAGAAATTCTCGAGAGGTTGCCAGCCCTAGGGTTCCAAGACAACAGAGAAAATTGGTTGAGAATGTGCATGTTCAGGGAAAGAAAGTTGCTGAGCTTATTACATCATCTGCTAGAAAGAAAAAAGTTGTTGGCACAATATCAAAGGTAGTTCAGGAGTCTGCTGATGGAACAAATTTGGATACCAAATTCAGATTGGTAGATGCAGATGACTCCAACATATGTTTGGATCATCA...

Protein

3 records

下载 Protein FASTA

XP_057776959.1
MQTKKRATGRNSREVASPRVPRQQRKLVENVHVQGKKVAELITSSARKKKVVGTISKVVQESADGTNLDTKFRLVDADDSNICLDHQAEHESHNSFINKSHENGAANYSADTIFSPSFHLARSDGDDISREADFYNYFRNGNQQFQDCGKENIQIDCPGGVTLSPEVSAIYLSMKNSNLECIDENNQDHMSADVRQEDEDAEEYDDFDPYFFIKNLPDLSSVVPTFRPLLLPKQTRSCPSTSLVLDLDETLVHSTLEPCD...

XP_057776960.1
MQTKKRATGRNSREVASPRVPRQQRKLVENVHVQGKKVAELITSSARKKKVVGTISKVVQESADGTNLDTKFRLVDADDSNICLDHQAEHESHNSFINKSHENGAANYSADTIFSPSFHLARSDGDDISREADFYNYFRNGNQQFQDCGKENIQIDCPGGVTLSPEVSAIYLSMKNSNLECIDENNQDHMSADVRQEDEDAEEYDDFDPYFFIKNLPDLSSVVPTFRPLLLPKQTRSCPSTSLVLDLDETLVHSTLEPCD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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