当前解析结果
SmilChr07G001954| 统一新 Gene ID | SmilChr07G001954 |
|---|---|
| 名称 | SmilChr07G001954 |
| 描述 | uncharacterized SmilChr07G001954 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 16992781 - 16997792 / + |
| NCBI Gene ID | LOC130995630 |
|---|---|
| GeneID | 130995630 |
| locus_tag | - |
| NCBI Name | LOC130995630 |
| 原始查询 | SmilChr07G001954 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoribosylformylglycinamidine synthase [Source:NCBI gene (formerly Entrezgene);Acc:839628]; symbol=AT1G27385; hit=AT1G27385; species=arabidopsis; confidence=high |
| 产物 | phosphoribosylformylglycinamidine synthase [Source:NCBI gene (formerly Entrezgene);Acc:839628]; symbol=AT1G27385; hit=AT1G27385; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G27385 (AT1G27385)phosphoribosylformylglycinamidine synthase [Source:NCBI gene (formerly Entrezgene);Acc:839628] identity=57.2; qcov=1.05; evalue=2.16e-77; confidence=high |
| Rice | Os04g0386500- identity=60.9; qcov=0.873; evalue=1.26e-71; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04359 (DUF493) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057776970.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057776970.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057776970.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776970.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776970.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:16993712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,C28,C62 |
Chr7:16994009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B18,C3 |
Chr7:16994075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B62,C47,C63 |
Chr7:16994085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,C47,C63 |
Chr7:16994088 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B131,C47 |
Chr7:16994088 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B131,C47 |
Chr7:16996753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:16996776 |
TTC |
T |
2bp_deletion | frameshift_variant | 178 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A24,A25,A3,A4,A5,A6,A7,A8,B10,B100,B102,B103,B105,B107,B108,B109,B110,B111,B115,B117,B119,B120,B124,B126,B127,B129,B130,B131,B132,B133,B134,B136,B137,B139,B14,B140,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B28,B3,B30,B35,B36,B39,B4,B41,B42,B43,B44,B47,B48,B49,B5,B50,B51,B53,B54,B55,B57,B58,B59,B61,B62,B64,B65,B66,B67,B70,B71,B73,B74,B76,B79,B80,B81,B86,B87,B88,B9,B90,B92,B93,B94,B96,B97,C1,C10,C11,C12,C13,C14,C16,C18,C19,C2,C20,C21,C22,C23,C25,C26,C27,C28,C30,C31,C32,C33,C34,C36,C37,C38,C4,C40,C41,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C58,C6,C60,C61,C62,C64,C66,C68,C69,C7,C70,C72,C73,C74,C75,C76,C77,C79,C8,C80,C84,C9,D1,D10,D11,D2,D3,D4,D5,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776970.1PF04359
DUF493 122-189 aa
XP_057776971.1PF04359
DUF493 122-205 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776970.1 |
Pfam | PF04359 |
DUF493 | Domain | 122 | 189 | 2e-13 | 51.4 | Protein of unknown function (DUF493) |
XP_057776971.1 |
Pfam | PF04359 |
DUF493 | Domain | 122 | 205 | 5.4e-20 | 72.5 | Protein of unknown function (DUF493) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。