当前解析结果
SmilChr07G001963| 统一新 Gene ID | SmilChr07G001963 |
|---|---|
| 名称 | SmilChr07G001963 |
| 描述 | transcription factor MYB60-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 17155333 - 17158036 / + |
| NCBI Gene ID | LOC130993902 |
|---|---|
| GeneID | 130993902 |
| locus_tag | - |
| NCBI Name | LOC130993902 |
| 原始查询 | SmilChr07G001963 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB60-like |
| 产物 | transcription factor MYB60-like |
| Arabidopsis | AT2G37630 (AS1)myb-like HTH transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:818340] identity=74.5; qcov=0.485; evalue=4.64e-41; confidence=medium |
| Rice | Os12g0572000 (OsMYB91)- identity=66.4; qcov=0.53; evalue=2.99e-34; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993902 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774920.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057774920.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774920.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774920.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774920.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:17155368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr7:17155433 |
AG |
A |
1bp_deletion | frameshift_variant | 7 | B129,B50,B76,B94,C13,C49,C53 |
Chr7:17155441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C41 |
Chr7:17155456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B94,C31 |
Chr7:17155464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,C31,D11 |
Chr7:17155479 |
G |
GAT |
2bp_insertion | frameshift_variant | 38 | A21,A23,B101,B108,B12,B120,B14,B140,B16,B2,B21,B35,B51,B52,B60,B64,B69,B80,B9,B91,B93,B94,C1,C10,C13,C17,C20,C21,C24,C27,C34,C42,C43,C70,C79,C81,C83,D1 |
Chr7:17155481 |
CGT |
C |
2bp_deletion | frameshift_variant | 39 | A21,A23,B108,B12,B120,B14,B140,B16,B2,B21,B35,B51,B52,B60,B64,B69,B80,B9,B91,B93,B94,C1,C10,C13,C17,C20,C21,C24,C27,C34,C42,C43,C48,C70,C79,C81,C83,D1,D10 |
Chr7:17155485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C41 |
Chr7:17155492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr7:17155515 |
GGA |
G |
2bp_deletion | frameshift_variant | 16 | A14,A6,B101,B126,B20,B46,B53,B63,B84,B97,B98,C29,C43,C52,C59,C74 |
Chr7:17155518 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | B111,B118,B57,B8,C20 |
Chr7:17155518 |
GA |
G |
1bp_deletion | CDS_variant | 5 | B111,B118,B57,B8,C20 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。