Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001970`

染色体: Chr07 坐标: 17254652-17262449 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001970`
名称	SmilChr07G001970
描述	agamous-like MADS-box protein AGL9 homolog
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	17254652 - 17262449 / `-`

ID 对照

NCBI Gene ID	`LOC130995643`
GeneID	`130995643`
locus_tag	`-`
NCBI Name	`LOC130995643`
原始查询	`SmilChr07G001970`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL9 homolog
产物	agamous-like MADS-box protein AGL9 homolog
Arabidopsis	`AT1G24260` (SEP3) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:839040] identity=77.6; qcov=1.02; evalue=9.07e-120; confidence=high
Rice	`Os08g0531700` (OsMADS7) - identity=61.3; qcov=1.11; evalue=9.17e-96; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:130995643

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776989.1`
2	Chromosome	染色体	0.00000	`XP_057776989.1`
3	Centromere	着丝粒	0.00000	`XP_057776989.1`
4	Chromatin	染色质	0.00000	`XP_057776989.1`
5	Telomere	端粒	0.00000	`XP_057776989.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:17255274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr7:17256057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr7:17262349`	`A`	`ATC`	2bp_insertion	frameshift_variant	33	A2,A22,A4,B108,B110,B111,B112,B118,B123,B131,B33,B37,B40,B47,B63,B67,B93,B95,B98,C2,C24,C29,C40,C44,C55,C57,C59,C65,C7,C70,C75,C76,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776989.1

243 aa

122

243

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 92-174 aa

XP_057776990.1

242 aa

121

242

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 91-173 aa

XP_057776991.1

229 aa

114

229

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 92-167 aa

XP_057776992.1

228 aa

114

228

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 91-166 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776989.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.3e-26	92.5	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057776989.1`	Pfam	`PF01486`	K-box	Family	92	174	2.3e-25	89.3	K-box region
`XP_057776990.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.3e-26	92.5	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057776990.1`	Pfam	`PF01486`	K-box	Family	91	173	2.2e-25	89.3	K-box region
`XP_057776991.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.2e-26	92.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057776991.1`	Pfam	`PF01486`	K-box	Family	92	167	1.9e-21	76.7	K-box region
`XP_057776992.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.2e-26	92.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057776992.1`	Pfam	`PF01486`	K-box	Family	91	166	1.9e-21	76.7	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057921009.1
GATAGTTATAAAGGAGGTGGGATGTACTAGAGAAAGAAAGAGAGACGGTTTTGTGTTTTTGTGAAGGGGAGTGATCGAAAGAGAGAGAGAGAGAGAGAGATGGGGAGAGGGAGAGTTGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACTTTTGCAAAACGGAGAAATGGGCTTTTGAAGAAAGCGTATGAGCTTTCGGTTCTATGTGACGCTGAGGTTGCTCTGATTATCTTCTCCAATAGAGGAAAGCT...

XM_057921007.1
TTATAAAGGAGGTGGGATGTACTAGAGAAAGAAAGAGAGACGGTTTTGTGTTTTTGTGAAGGGGAGTGATCGAAAGAGAGAGAGAGAGAGAGAGATGGGGAGAGGGAGAGTTGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACTTTTGCAAAACGGAGAAATGGGCTTTTGAAGAAAGCGTATGAGCTTTCGGTTCTATGTGACGCTGAGGTTGCTCTGATTATCTTCTCCAATAGAGGAAAGCTGTACG...

CDS

4 records

下载 CDS FASTA

LOC130995643
ATGGGGAGAGGGAGAGTTGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACTTTTGCAAAACGGAGAAATGGGCTTTTGAAGAAAGCGTATGAGCTTTCGGTTCTATGTGACGCTGAGGTTGCTCTGATTATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGCTCTAGCATGCTCAAGACACTGGAAAGGTATCAGAAGTGCAACTACGGAGCTCCAGATACAAGTGTATCCACAAGAGAGGC...

Protein

4 records

下载 Protein FASTA

XP_057776989.1
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSSMLKTLERYQKCNYGAPDTSVSTREALELSSQQEYLKLKARYEALQRTQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQAMLDTLQDLQNKEHALNEANKSLKQRLMEGNQMNLTWNQNAQDVGYGRQPQHQPQADGFFHPLECEPTLQIGYHTDPITGAAAGPSVNNYISGWLP

XP_057776990.1
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPDTSVSTREALELSSQQEYLKLKARYEALQRTQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQAMLDTLQDLQNKEHALNEANKSLKQRLMEGNQMNLTWNQNAQDVGYGRQPQHQPQADGFFHPLECEPTLQIGYHTDPITGAAAGPSVNNYISGWLP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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