当前解析结果
SmilChr07G001979| 统一新 Gene ID | SmilChr07G001979 |
|---|---|
| 名称 | SmilChr07G001979 |
| 描述 | uncharacterized SmilChr07G001979 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 17396382 - 17401184 / + |
| NCBI Gene ID | LOC130993907 |
|---|---|
| GeneID | 130993907 |
| locus_tag | - |
| NCBI Name | LOC130993907 |
| 原始查询 | SmilChr07G001979 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os08g0202300- identity=30.6; qcov=0.237; evalue=2.03e-55; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993907 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774926.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057774926.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057774926.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774926.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774926.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:17396481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:17396568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,C60 |
Chr7:17396571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B73 |
Chr7:17396603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C41 |
Chr7:17396624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr7:17396642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,B79,C36 |
Chr7:17396651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr7:17396667 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A6,B126,B33,B34,B97,C73 |
Chr7:17396671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B29,B97,C10 |
Chr7:17396672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr7:17396694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,C1,C86 |
Chr7:17396739 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B134,B2,C74,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774926.1PF00078
RVT_1 666-818 aa
PF17919
RT_RNaseH_2 881-979 aa
PF17917
RT_RNaseH 909-1008 aa
PF13456
RVT_3 1043-1160 aa
PF17921
Integrase_H2C2 1251-1302 aa
PF00665
rve 1317-1415 aa
PF31073
DUF8803 1540-1599 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774926.1 |
Pfam | PF00078 |
RVT_1 | Domain | 666 | 818 | 8.1e-27 | 95.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057774926.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 881 | 979 | 8.1e-20 | 71.5 | RNase H-like domain found in reverse transcriptase |
XP_057774926.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 909 | 1008 | 1.8e-12 | 48.0 | RNase H-like domain found in reverse transcriptase |
XP_057774926.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1043 | 1160 | 4.8e-17 | 62.7 | Reverse transcriptase-like |
XP_057774926.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1251 | 1302 | 8e-10 | 39.4 | Integrase zinc binding domain |
XP_057774926.1 |
Pfam | PF00665 |
rve | Domain | 1317 | 1415 | 1.4e-18 | 67.7 | Integrase core domain |
XP_057774926.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1540 | 1599 | 3.5e-23 | 81.9 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。