当前解析结果
SmilChr07G002002| 统一新 Gene ID | SmilChr07G002002 |
|---|---|
| 名称 | SmilChr07G002002 |
| 描述 | uncharacterized SmilChr07G002002 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 17759947 - 17760903 / + |
| NCBI Gene ID | LOC130993915 |
|---|---|
| GeneID | 130993915 |
| locus_tag | - |
| NCBI Name | LOC130993915 |
| 原始查询 | SmilChr07G002002 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BCL-2-associated athano 5 [Source:NCBI gene (formerly Entrezgene);Acc:837758]; symbol=BAG5; hit=AT1G12060; species=arabidopsis; confidence=low |
| 产物 | BCL-2-associated athano 5 [Source:NCBI gene (formerly Entrezgene);Acc:837758]; symbol=BAG5; hit=AT1G12060; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G12060 (BAG5)BCL-2-associated athano 5 [Source:NCBI gene (formerly Entrezgene);Acc:837758] identity=36.2; qcov=0.434; evalue=5.16e-22; confidence=low |
| Rice | Os02g0719700 (OsBAG6)- identity=40.3; qcov=0.421; evalue=6.61e-20; confidence=low |
| GO | GO:0006457 (protein folding); GO:0009506 (plasmodesma); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF00612 (IQ); PF02179 (BAG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993915 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774934.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057774934.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057774934.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774934.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774934.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:17760361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,B89,C67 |
Chr7:17760420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:17760432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr7:17760534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:17760537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,C77 |
Chr7:17760551 |
AG |
A |
1bp_deletion | frameshift_variant | 4 | A8,B36,C45,C58 |
Chr7:17760551 |
AG |
A |
1bp_deletion | CDS_variant | 4 | A8,B36,C45,C58 |
Chr7:17760558 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B28 |
Chr7:17760747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774934.1PF00612
IQ 65-83 aa
PF02179
BAG 85-159 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774934.1 |
Pfam | PF00612 |
IQ | Motif | 65 | 83 | 1.4e-05 | 25.1 | IQ calmodulin-binding motif |
XP_057774934.1 |
Pfam | PF02179 |
BAG | Family | 85 | 159 | 3.6e-10 | 40.9 | BAG domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。