当前解析结果
SmilChr07G002008| 统一新 Gene ID | SmilChr07G002008 |
|---|---|
| 名称 | SmilChr07G002008 |
| 描述 | exocyst complex component EXO70B1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 17848452 - 17850692 / - |
| NCBI Gene ID | LOC130995669 |
|---|---|
| GeneID | 130995669 |
| locus_tag | - |
| NCBI Name | LOC130995669 |
| 原始查询 | SmilChr07G002008 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70B1 |
| 产物 | exocyst complex component EXO70B1 |
| Arabidopsis | AT5G13150 (EXO70C1)exocyst subunit exo70 family protein C1 [Source:NCBI gene (formerly Entrezgene);Acc:831154] identity=45.6; qcov=0.952; evalue=0; confidence=high |
| Rice | Os11g0167600 (OsEXO70C2)- identity=42.2; qcov=0.884; evalue=3.9e-152; confidence=medium |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995669 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057777024.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057777024.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057777024.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057777024.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057777024.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:17848872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C25,C29 |
Chr7:17848889 |
TTC |
T |
2bp_deletion | frameshift_variant | 4 | B24,B97,C48,C86 |
Chr7:17848889 |
TTC |
T |
2bp_deletion | CDS_variant | 4 | B24,B97,C48,C86 |
Chr7:17848895 |
ACC |
A |
2bp_deletion | frameshift_variant | 3 | B24,B97,C86 |
Chr7:17848895 |
ACC |
A |
2bp_deletion | CDS_variant | 3 | B24,B97,C86 |
Chr7:17848898 |
AGC |
A |
2bp_deletion | frameshift_variant | 2 | C25,C29 |
Chr7:17848898 |
AGC |
A |
2bp_deletion | CDS_variant | 2 | C25,C29 |
Chr7:17848911 |
TC |
T |
1bp_deletion | frameshift_variant | 4 | B24,B97,C48,C86 |
Chr7:17848911 |
TC |
T |
1bp_deletion | CDS_variant | 4 | B24,B97,C48,C86 |
Chr7:17848914 |
G |
GGC |
2bp_insertion | frameshift_variant | 2 | C25,C29 |
Chr7:17848914 |
G |
GGC |
2bp_insertion | CDS_variant | 2 | C25,C29 |
Chr7:17848915 |
CG |
C |
1bp_deletion | frameshift_variant | 4 | B24,B97,C48,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057777024.1PF20669
Exo70_N 82-159 aa
PF03081
Exo70_C 266-635 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057777024.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 82 | 159 | 3.1e-07 | 31.2 | Exocyst complex component Exo70 N-terminal |
XP_057777024.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 266 | 635 | 2.8e-115 | 386.1 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。