Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002022`

染色体: Chr07 坐标: 18171094-18179555 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002022`
名称	SmilChr07G002022
描述	uncharacterized protein At2g33490-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18171094 - 18179555 / `+`

ID 对照

NCBI Gene ID	`LOC130991180`
GeneID	`130991180`
locus_tag	`-`
NCBI Name	`LOC130991180`
原始查询	`SmilChr07G002022`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:817914]; symbol=AT2G33490; hit=AT2G33490; species=arabidopsis; confidence=medium
产物	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:817914]; symbol=AT2G33490; hit=AT2G33490; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G33490` (AT2G33490) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:817914] identity=42.9; qcov=0.991; evalue=1.55e-106; confidence=medium
Rice	`Os09g0509300` - identity=40.6; qcov=0.947; evalue=1.17e-94; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130991180

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771247.1`
2	Cytoskeleton	细胞骨架	0.80000	`XP_057771252.1`
3	Cytosol	细胞质基质	0.40000	`XP_057771251.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057771247.1`
5	Trans-golgi network	Trans-golgi network	0.20000	`XP_057771252.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18172694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,A7,C80
`Chr7:18175491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:18175632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C45
`Chr7:18177348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B67,B7,C2
`Chr7:18177500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:18177700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B131,C5,C83
`Chr7:18178028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,C33

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009091093.1
AAGGCCGAGTTCCTCGATCTGACATACTACTAGTTTTCCTTTTCTAACAGCTTTGACGTAACCAAAAATGGTGACCGCCTTCTCGCTCCGCGCCCCATTATTCCCTCTCTACGCCTTCAATTTCATCTAGGGTTTCTTTGTCACTTGTCTATTCTACTCTGACGCTTTCTCCTAATATAAGCGCTGCCGCGTATGTCGATTGCATTTGTTTCCGTGTATTCTTTGAAACCTTGTTTTTGAGGGAAAAAAACTGAACGAGA...

XR_009091094.1
AAGGCCGAGTTCCTCGATCTGACATACTACTAGTTTTCCTTTTCTAACAGCTTTGACGTAACCAAAAATGGTGACCGCCTTCTCGCTCCGCGCCCCATTATTCCCTCTCTACGCCTTCAATTTCATCTAGGGTTTCTTTGTCACTTGTCTATTCTACTCTGACGCTTTCTCCTAATATAAGCGCTGCCGCGTATGTCGATTGCATTTGTTTCCGTGTATTCTTTGAAACCTTGTTTTTGAGGGAAAAAAACTGAACGAGA...

CDS

5 records

下载 CDS FASTA

LOC130991180
ATGAAGACATCGCTGAAGAAATTGCAAAAATTTGCTTCGCATAGGCACGATAGAAGAGCGCAAAAGCAGCACCAATCCGTGTCTCTAGATGAGCACGCTCGAGCTACTCAGGACATGATTGATATGAGAGACTGCTATGATAGGCTACTGTCAGCTGCAGCCGCAACTGCAAACAGTGTATATGAATTTTCAGAATCATTAAGGGAGATGGGTGATTGTCTTCTTGAAAAAACAGCCCTGAATGACGACGAAGAAAGTGG...

Protein

5 records

下载 Protein FASTA

XP_057771247.1
MKTSLKKLQKFASHRHDRRAQKQHQSVSLDEHARATQDMIDMRDCYDRLLSAAAATANSVYEFSESLREMGDCLLEKTALNDDEESGKVLLMLGKKQFELQKLIDGYRTHIFQTITIPSESLLNELRIVEEMKRRCDEKRELYDDLLNKQKEKARLRNSKSEHFHSPQLQEAHDEYDEEANVFVFRMKSLKQGQSRSFLTQASRHHAAQLYFFKRAARSLEAIEPHVRLLAEQLHIDYHFSGLQDDGREILDDDDDDDDD...

XP_057771248.1
MKTSLKKLQKFASHRHDRRAQKQHQSVSLDEHARATQDMIDMRDCYDRLLSAAAATANSVYEFSESLREMGDCLLEKTALNDDEESGKVLLMLGKKQFELQKLIDGYRTHIFQTITIPSESLLNELRIVEEMKRRCDEKRELYDDLLNKQKEKARLRNSKSEHFHSPQLQEAHDEYDEEANVFVFRMKSLKQGQSRSFLTQASRHHAAQLYFFKRAARSLEAIEPHVRLLAEQLHIDYHFSGLQDDGREILDDDDDDDDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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