当前解析结果
SmilChr07G002025| 统一新 Gene ID | SmilChr07G002025 |
|---|---|
| 名称 | SmilChr07G002025 |
| 描述 | uncharacterized SmilChr07G002025 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 18237137 - 18238066 / + |
| NCBI Gene ID | LOC130993921 |
|---|---|
| GeneID | 130993921 |
| locus_tag | - |
| NCBI Name | LOC130993921 |
| 原始查询 | SmilChr07G002025 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=27.7; qcov=0.922; evalue=8.71e-23; confidence=low |
| Rice | Os06g0484800- identity=31.6; qcov=0.871; evalue=4.62e-28; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993921 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774940.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057774940.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057774940.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774940.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774940.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:18237177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B48,C73,D10 |
Chr7:18237196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C39 |
Chr7:18237234 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B2 |
Chr7:18237234 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B2 |
Chr7:18237257 |
G |
GA |
1bp_insertion | frameshift_variant | 34 | A1,A18,A19,A20,B107,B111,B13,B134,B139,B2,B21,B34,B35,B41,B55,B57,B58,B70,B86,C18,C2,C23,C27,C28,C3,C34,C35,C39,C40,C50,C72,C75,C76,C79 |
Chr7:18237262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr7:18237274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,B98,C47 |
Chr7:18237286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:18237299 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B13,B18,B44,B49,B79,C51 |
Chr7:18237354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr7:18237358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:18237390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B36,B48,D10,D4,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。