Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002031`

染色体: Chr07 坐标: 18390444-18394240 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002031`
名称	SmilChr07G002031
描述	U-box domain-containing protein 4
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18390444 - 18394240 / `+`

ID 对照

NCBI Gene ID	`LOC130993102`
GeneID	`130993102`
locus_tag	`-`
NCBI Name	`LOC130993102`
原始查询	`SmilChr07G002031`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 4
产物	U-box domain-containing protein 4
Arabidopsis	`AT2G23140` (PUB4) RING/U-box superfamily protein with ARM repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816846] identity=60; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0110500` (PUB15) - identity=53.9; qcov=1.03; evalue=0; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00514 (Arm); PF04564 (U-box); PF04826 (Arm_2); PF25240 (PUB2_N); PF25598 (ARM_PUB)
InterPro	-
eggNOG	-
NR	GeneID:130993102

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057773814.1`
2	Cytosol	细胞质基质	0.60000	`XP_057773812.1`
3	Cytoplasm	细胞质	0.40000	`XP_057773814.1`
4	Nucleus	细胞核	0.00000	`XP_057773812.1`
5	Chromosome	染色体	0.00000	`XP_057773812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18392296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr7:18392628`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A10
`Chr7:18392628`	`GA`	`G`	1bp_deletion	CDS_variant	1	A10
`Chr7:18392632`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A10
`Chr7:18392632`	`TG`	`T`	1bp_deletion	CDS_variant	1	A10
`Chr7:18392915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr7:18393289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B126,B46,B68,B71
`Chr7:18393307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr7:18393529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C45
`Chr7:18393575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:18393601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773812.1

820 aa

410

820

PUB2_N

U-box

ARM_PUB

Arm_2

Arm

PF25240 PUB2_N 2-139 aa PF04564 U-box 234-304 aa PF25598 ARM_PUB 537-812 aa PF04826 Arm_2 538-710 aa PF00514 Arm 568-605 aa PF00514 Arm 650-687 aa

XP_057773813.1

820 aa

410

820

PUB2_N

U-box

ARM_PUB

Arm_2

Arm

PF25240 PUB2_N 2-139 aa PF04564 U-box 234-304 aa PF25598 ARM_PUB 537-812 aa PF04826 Arm_2 538-710 aa PF00514 Arm 568-605 aa PF00514 Arm 650-687 aa

XP_057773814.1

816 aa

408

816

PUB2_N

U-box

ARM_PUB

Arm_2

Arm

PF25240 PUB2_N 2-131 aa PF04564 U-box 230-300 aa PF25598 ARM_PUB 533-808 aa PF04826 Arm_2 534-706 aa PF00514 Arm 564-601 aa PF00514 Arm 646-683 aa

XP_057773815.1

816 aa

408

816

PUB2_N

U-box

ARM_PUB

Arm_2

Arm

PF25240 PUB2_N 2-131 aa PF04564 U-box 230-300 aa PF25598 ARM_PUB 533-808 aa PF04826 Arm_2 534-706 aa PF00514 Arm 564-601 aa PF00514 Arm 646-683 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773812.1`	Pfam	`PF25240`	PUB2_N	Domain	2	139	9.5e-55	185.1	PUB2-like, N-terminal domain
`XP_057773812.1`	Pfam	`PF04564`	U-box	Domain	234	304	8.6e-23	81.0	U-box domain
`XP_057773812.1`	Pfam	`PF25598`	ARM_PUB	Repeat	537	812	4.1e-28	99.4	Plant U-box protein ARM repeat region
`XP_057773812.1`	Pfam	`PF04826`	Arm_2	Repeat	538	710	0.00038	20.8	Armadillo-like
`XP_057773812.1`	Pfam	`PF00514`	Arm	Repeat	568	605	3.8e-38	129.0	Armadillo/beta-catenin-like repeat
`XP_057773812.1`	Pfam	`PF00514`	Arm	Repeat	650	687	3.8e-38	129.0	Armadillo/beta-catenin-like repeat
`XP_057773813.1`	Pfam	`PF25240`	PUB2_N	Domain	2	139	9.5e-55	185.1	PUB2-like, N-terminal domain
`XP_057773813.1`	Pfam	`PF04564`	U-box	Domain	234	304	8.6e-23	81.0	U-box domain
`XP_057773813.1`	Pfam	`PF25598`	ARM_PUB	Repeat	537	812	4.1e-28	99.4	Plant U-box protein ARM repeat region
`XP_057773813.1`	Pfam	`PF04826`	Arm_2	Repeat	538	710	0.00038	20.8	Armadillo-like
`XP_057773813.1`	Pfam	`PF00514`	Arm	Repeat	568	605	3.8e-38	129.0	Armadillo/beta-catenin-like repeat
`XP_057773813.1`	Pfam	`PF00514`	Arm	Repeat	650	687	3.8e-38	129.0	Armadillo/beta-catenin-like repeat
`XP_057773814.1`	Pfam	`PF25240`	PUB2_N	Domain	2	131	2.1e-51	174.3	PUB2-like, N-terminal domain
`XP_057773814.1`	Pfam	`PF04564`	U-box	Domain	230	300	8.7e-23	81.0	U-box domain
`XP_057773814.1`	Pfam	`PF25598`	ARM_PUB	Repeat	533	808	4.1e-28	99.4	Plant U-box protein ARM repeat region
`XP_057773814.1`	Pfam	`PF04826`	Arm_2	Repeat	534	706	0.00038	20.7	Armadillo-like
`XP_057773814.1`	Pfam	`PF00514`	Arm	Repeat	564	601	3.6e-38	129.1	Armadillo/beta-catenin-like repeat
`XP_057773814.1`	Pfam	`PF00514`	Arm	Repeat	646	683	3.6e-38	129.1	Armadillo/beta-catenin-like repeat
`XP_057773815.1`	Pfam	`PF25240`	PUB2_N	Domain	2	131	2.1e-51	174.3	PUB2-like, N-terminal domain
`XP_057773815.1`	Pfam	`PF04564`	U-box	Domain	230	300	8.7e-23	81.0	U-box domain
`XP_057773815.1`	Pfam	`PF25598`	ARM_PUB	Repeat	533	808	4.1e-28	99.4	Plant U-box protein ARM repeat region
`XP_057773815.1`	Pfam	`PF04826`	Arm_2	Repeat	534	706	0.00038	20.7	Armadillo-like
`XP_057773815.1`	Pfam	`PF00514`	Arm	Repeat	564	601	3.6e-38	129.1	Armadillo/beta-catenin-like repeat
`XP_057773815.1`	Pfam	`PF00514`	Arm	Repeat	646	683	3.6e-38	129.1	Armadillo/beta-catenin-like repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057917829.1
GTTCACGTACAAATATTGCGGTATTGGGGAATGATAGCAATTTTGTATTCGAATATTTGTTTTTTCTTATTGAAATAATTAAAGATTACACCCACTTTTGTAAAATATATTGTTGAATTCTGGTCAAATATGGTGTGCAGCCCAGCCTGAAAGTCAACGTAAACCCAGTATACCCCCAAATCAGAGAACCCTTCTCATCCGATGTTCCGCCTTCCTCCCTGCGCCACCCCCGCCGCCGCCTCCACTGCTCTTCCTGAATC...

XM_057917830.1
AATATTTGTTTTTTCTTATTGAAATAATTAAAGATTACACCCACTTTTGTAAAATATATTGTTGAATTCTGGTCAAATATGGTGTGCAGCCCAGCCTGAAAGTCAACGTAAACCCAGTATACCCCCAAATCAGAGAACCCTTCTCATCCGATGTTCCGCCTTCCTCCCTGCGCCACCCCCGCCGCCGCCTCCACTGCTCTTCCTGAATCGTCCGCCGTCCTACTCCTCCGCAAAGATCGGAAACCCTCATACTCTATCTG...

CDS

4 records

下载 CDS FASTA

LOC130993102
ATGGAGATATCGTTGTTGAAATCACTTCTCAACAGCATCACTTGTTTTTTACAATTATCCTCTTGTGAAAGCATAAAAACTGAACCAGTTCAGACATATCACAAAAAGATTGAAGAGATACTGAATTTTTTAAAGCCAATACTTGATGCGATTGCCGATGCTGAAATTATCTCCGATGAAATGCTTCAAAGAGCTGGAATCCTACAAGCTGTTGATGACTTGAAAGAGATATGTGAAAACTGGCAGCCATTAATGAGTAA...

Protein

4 records

下载 Protein FASTA

XP_057773812.1
MEISLLKSLLNSITCFLQLSSCESIKTEPVQTYHKKIEEILNFLKPILDAIADAEIISDEMLQRAGILQAVDDLKEICENWQPLMSKVYFVLQVESLMSKIRNHSLEILELLKSSDDCLPVELSSASLEQYVQKIKHVESEQTSSIIMGAIKDHMEGSGASAESLADVADSLGLKSNEELLIEVVALEKLKENAEQADRSSEVDYIDQMISLVTHMHDELVTVKQSETCNHVAIPPDFCCPLSLELMTDPVIVASGQTYE...

XP_057773813.1
MEISLLKSLLNSITCFLQLSSCESIKTEPVQTYHKKIEEILNFLKPILDAIADAEIISDEMLQRAGILQAVDDLKEICENWQPLMSKVYFVLQVESLMSKIRNHSLEILELLKSSDDCLPVELSSASLEQYVQKIKHVESEQTSSIIMGAIKDHMEGSGASAESLADVADSLGLKSNEELLIEVVALEKLKENAEQADRSSEVDYIDQMISLVTHMHDELVTVKQSETCNHVAIPPDFCCPLSLELMTDPVIVASGQTYE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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