Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002036`

染色体: Chr07 坐标: 18456962-18465975 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002036`
名称	SmilChr07G002036
描述	uncharacterized SmilChr07G002036
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18456962 - 18465975 / `+`

ID 对照

NCBI Gene ID	`LOC130993117`
GeneID	`130993117`
locus_tag	`-`
NCBI Name	`LOC130993117`
原始查询	`SmilChr07G002036`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:831589]; symbol=AT5G17250; hit=AT5G17250; species=arabidopsis; confidence=high
产物	Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:831589]; symbol=AT5G17250; hit=AT5G17250; species=arabidopsis; confidence=high
Arabidopsis	`AT5G17250` (AT5G17250) Alkaline-phosphatase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:831589] identity=54.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os10g0170300` - identity=51.3; qcov=1.03; evalue=0; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0051377 (mannose-ethanolamine phosphotransferase activity)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01663 (Phosphodiest)
InterPro	-
eggNOG	-
NR	GeneID:130993117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057773851.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057773851.1`
3	Nucleus	细胞核	0.00000	`XP_057773851.1`
4	Chromosome	染色体	0.00000	`XP_057773851.1`
5	Centromere	着丝粒	0.00000	`XP_057773851.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18457363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B101,C70
`Chr7:18457366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B52,B86,D3
`Chr7:18457813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:18459184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,D1,D8
`Chr7:18460660`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B52,B98,C55
`Chr7:18461317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:18461963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr7:18461996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:18463395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,C63,C87
`Chr7:18463487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:18463546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:18463587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773851.1

975 aa

488

975

Phosphodiest

PF01663 Phosphodiest 243-328 aa

XP_057773853.1

839 aa

420

839

Phosphodiest

PF01663 Phosphodiest 107-192 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773851.1`	Pfam	`PF01663`	Phosphodiest	Family	243	328	7e-09	36.4	Type I phosphodiesterase / nucleotide pyrophosphatase
`XP_057773853.1`	Pfam	`PF01663`	Phosphodiest	Family	107	192	7.6e-09	36.3	Type I phosphodiesterase / nucleotide pyrophosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917868.1
TATTAAAAGATTTCTTCACTTGCTTGGAACATAACAATTTTATTTAAATTTTTTAATGATTTTGGGTCAGGCTAATTTGGAGTTACTCACTATAACTTCATCTCTAACCCTAGGATCCATAGACCCAACTAACTATCCATAGCTCCATTTTTTTTTTTTTTGAGAGCATCCATAGCTCCATTTTGGTTAATGCTCAAATTGAGTGAAGCAGTATACTGCTCAGATTCTGAACTAAAACTATGTGAGAACCAATTTCTGAG...

XM_057917870.1
AGCTCCATTTTGGTTAATGCTCAAATTGAGTGAAGCAGTATACTGCTCAGATTCTGAACTAAAACTATGTGAGAACCAATTTCTGAGAAGATCCGTATACTGGAAAATGGGGATATATGAGAAACGGGTTTGGAGAAGCGAGAATTGGATTGGGCGGGGATTCCTGGGAATAATGCTGCTTCACAGCTTGGCCATTTTGCTGTTTACCAGAGGTTTCCTTCTTACTCGCACGGAGCTTTCCCATTATAGTGAATGCAACG...

CDS

2 records

下载 CDS FASTA

LOC130993117
ATGCTCAAATTGAGTGAAGCAGTATACTGCTCAGATTCTGAACTAAAACTATGTGAGAACCAATTTCTGAGAAGATCCGTATACTGGAAAATGGGGATATATGAGAAACGGGTTTGGAGAAGCGAGAATTGGATTGGGCGGGGATTCCTGGGAATAATGCTGCTTCACAGCTTGGCCATTTTGCTGTTTACCAGAGGTTTCCTTCTTACTCGCACGGAGCTTTCCCATTATAGTGAATGCAACGACGTCGTCGAGTCGCC...

LOC130993117
ATGGATAGGTTACAAGTGATGCATGAACTTGCTGCTCGGAACCAATCATCGACAAGAATTTTCAAAGCTATAGCCGACCCCCCTACCACCAGCTTGCAGCGTCTAAAGGGCTTGACTACGGGTGGACTTCCCACATTTATTGATGTGGGGAACAGTTTTGGTGCTCCAGCAATTCTTGAAGATAACTTGATACATCAGTTGGTTCAAAATGGCAAACGAGTGGTGATGATGGGGGATGATACATGGGTGCAATTATTTCC...

Protein

2 records

下载 Protein FASTA

XP_057773851.1
MLKLSEAVYCSDSELKLCENQFLRRSVYWKMGIYEKRVWRSENWIGRGFLGIMLLHSLAILLFTRGFLLTRTELSHYSECNDVVESPCFAPTRHQNYANGSCWTKPAVARLVIIVLDALRFDFVAPSTFFAEKKPWMDRLQVMHELAARNQSSTRIFKAIADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAILEDNLIHQLVQNGKRVVMMGDDTWVQLFPDHFATSYPFPSFNVKDLDTVDNGCITNLFPALYKEDW...

XP_057773853.1
MDRLQVMHELAARNQSSTRIFKAIADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAILEDNLIHQLVQNGKRVVMMGDDTWVQLFPDHFATSYPFPSFNVKDLDTVDNGCITNLFPALYKEDWDVLIAHFLGVDHAGHIFGVDSNPMIEKLEQYNEVIEKVVGALNSQSGPGGLHENTMLLVMGDHGQTLNGDHGGGTAEEVETAIFALTMKKPNTLPAAAESSSCQLDVHERRVCTNSIQQLDFAATVSALLGIPFPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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