Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002053`

染色体: Chr07 坐标: 18638628-18646660 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002053`
名称	SmilChr07G002053
描述	protein MEI2-like 4
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18638628 - 18646660 / `+`

ID 对照

NCBI Gene ID	`LOC130993133`
GeneID	`130993133`
locus_tag	`-`
NCBI Name	`LOC130993133`
原始查询	`SmilChr07G002053`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MEI2-like 4
产物	protein MEI2-like 4
Arabidopsis	`AT5G61960` (ML1) MEI2-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:836317] identity=48.7; qcov=0.868; evalue=0; confidence=high
Rice	`Os02g0517531` (ML4) - identity=52.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF04059 (RRM_2); PF13893 (RRM_5)
InterPro	-
eggNOG	-
NR	GeneID:130993133

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057773883.1`
2	Cytoplasm	细胞质	0.80000	`XP_057773883.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057773883.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057773883.1`
5	P-body	P-body	0.20000	`XP_057773883.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18642172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr7:18643127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B8,C58
`Chr7:18643136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B8,C58
`Chr7:18643215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr7:18643872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B52,B98,C55
`Chr7:18644600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,A3,B101,B80
`Chr7:18644692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C30,D11,D9
`Chr7:18644702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,A3,B101,B80
`Chr7:18644863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B34,B45,C46,C70,C83
`Chr7:18646102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,A3,B101,B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773883.1

988 aa

494

988

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 814-910 aa

XP_057773884.1

988 aa

494

988

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 814-910 aa

XP_057773885.1

988 aa

494

988

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 814-910 aa

XP_057773886.1

988 aa

494

988

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 814-910 aa

XP_057773887.1

987 aa

494

987

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 813-909 aa

XP_057773888.1

987 aa

494

987

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 813-909 aa

XP_057773889.1

987 aa

494

987

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 275-348 aa PF00076 RRM_1 278-342 aa PF13893 RRM_5 360-431 aa PF00076 RRM_1 363-428 aa PF04059 RRM_2 813-909 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773883.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773883.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773883.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773883.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773883.1`	Pfam	`PF04059`	RRM_2	Family	814	910	4.1e-53	178.3	RNA recognition motif 2
`XP_057773884.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773884.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773884.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773884.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773884.1`	Pfam	`PF04059`	RRM_2	Family	814	910	4.1e-53	178.3	RNA recognition motif 2
`XP_057773885.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773885.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773885.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773885.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773885.1`	Pfam	`PF04059`	RRM_2	Family	814	910	4.1e-53	178.3	RNA recognition motif 2
`XP_057773886.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773886.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773886.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773886.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773886.1`	Pfam	`PF04059`	RRM_2	Family	814	910	4.1e-53	178.3	RNA recognition motif 2
`XP_057773887.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773887.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773887.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773887.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773887.1`	Pfam	`PF04059`	RRM_2	Family	813	909	4.1e-53	178.3	RNA recognition motif 2
`XP_057773888.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773888.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773888.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773888.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773888.1`	Pfam	`PF04059`	RRM_2	Family	813	909	4.1e-53	178.3	RNA recognition motif 2
`XP_057773889.1`	Pfam	`PF13893`	RRM_5	Domain	275	348	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773889.1`	Pfam	`PF00076`	RRM_1	Domain	278	342	7.2e-26	90.6	RNA recognition motif
`XP_057773889.1`	Pfam	`PF13893`	RRM_5	Domain	360	431	2.9e-07	30.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057773889.1`	Pfam	`PF00076`	RRM_1	Domain	363	428	7.2e-26	90.6	RNA recognition motif
`XP_057773889.1`	Pfam	`PF04059`	RRM_2	Family	813	909	4.1e-53	178.3	RNA recognition motif 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057917901.1
TTGCAATCTGGGATGGGTTTTGTTTGAACAATGATTGGTAAAAGTGGCCGGTGTAACAAGTGTGCGTCATACAGGATAATTCGCATAATATGTTTGATCCGAACAGTGAGACATTAATAAAAAAATTAGGGGAAGAAGAAAAAGGATGAAAATGAAATAGTCTAATTATATTTCTTTCTATTTTTCTTCTTCGTTTCTTGCAATTTCCATCGCTCTTCAAATTCTCCATAAAAACCGATCTCTAGTTTCTTCTCTCTCTC...

XM_057917905.1
TTGCAATCTGGGATGGGTTTTGTTTGAACAATGATTGGTAAAAGTGGCCGGTGTAACAAGTGTGCGTCATACAGGATAATTCGCATAATATGTTTGATCCGAACAGTGAGACATTAATAAAAAAATTAGGGGAAGAAGAAAAAGGATGAAAATGAAATAGTCTAATTATATTTCTTTCTATTTTTCTTCTTCGTTTCTTGCAATTTCCATCGCTCTTCAAATTCTCCATAAAAACCGATCTCTAGTTTCTTCTCTCTCTC...

CDS

7 records

下载 CDS FASTA

LOC130993133
ATGATGAACTCTCGGGGTTTTTCTCCTTCATCCTTCTTCTCAGAGGAGGTCTGCTTGTCCGATGAGAAACAGGTTGGTGTAAAGAAGATGGACCAAATGAGTGGCTATGGCGCTTTTAAACTAGATGGGACGCCAAGAACTGAAGGTGTTGCTTCATCACCTCATGAAAATAGAATCCCATTGGAATCACATGCGGGAAATGGTTTTGCTCTTCCTGACTATTATCTCAGTCGTGGTCGAAATGCTAACCTTTCGTTGGG...

Protein

7 records

下载 Protein FASTA

XP_057773883.1
MMNSRGFSPSSFFSEEVCLSDEKQVGVKKMDQMSGYGAFKLDGTPRTEGVASSPHENRIPLESHAGNGFALPDYYLSRGRNANLSLGKHLIGADRAVSRSLPSAVDHDLGSRTNSNIQPVPYCFDGDKINLMGAQYENGLFSSSMSDLFSRNLKLSSNNGPYGHSFAAAAAASHYEEDEVFESLEELEAQTIGNLLPDDDDLLSGVTDGFGSVIRSNNVEDVEDLDLFSSVGGLELGEDSFLQRNPDLSDLNSNNQLGIS...

XP_057773884.1
MMNSRGFSPSSFFSEEVCLSDEKQVGVKKMDQMSGYGAFKLDGTPRTEGVASSPHENRIPLESHAGNGFALPDYYLSRGRNANLSLGKHLIGADRAVSRSLPSAVDHDLGSRTNSNIQPVPYCFDGDKINLMGAQYENGLFSSSMSDLFSRNLKLSSNNGPYGHSFAAAAAASHYEEDEVFESLEELEAQTIGNLLPDDDDLLSGVTDGFGSVIRSNNVEDVEDLDLFSSVGGLELGEDSFLQRNPDLSDLNSNNQLGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器