当前解析结果
SmilChr07G002063| 统一新 Gene ID | SmilChr07G002063 |
|---|---|
| 名称 | SmilChr07G002063 |
| 描述 | peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 18765217 - 18768201 / + |
| NCBI Gene ID | LOC130993146 |
|---|---|
| GeneID | 130993146 |
| locus_tag | - |
| NCBI Name | LOC130993146 |
| 原始查询 | SmilChr07G002063 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic |
| 产物 | peptidyl-prolyl cis-trans isomerase FKBP19%2C chloroplastic |
| Arabidopsis | AT5G13410 (AT5G13410)FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831182] identity=65.9; qcov=1.02; evalue=8.24e-113; confidence=high |
| Rice | Os07g0133700 (OsFKBP19)- identity=61.9; qcov=0.996; evalue=2.96e-102; confidence=high |
| GO | GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0009507 (chloroplast); GO:0009579 (thylakoid) |
| KEGG | - |
| Pfam | PF00254 (FKBP_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993146 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057773909.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057773909.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057773909.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773909.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773909.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:18765324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,C26,C54 |
Chr7:18765340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:18765341 |
G |
GT |
1bp_insertion | frameshift_variant | 71 | A15,A16,A21,A24,B103,B104,B109,B115,B120,B122,B124,B129,B13,B131,B133,B138,B140,B15,B2,B20,B26,B28,B31,B33,B34,B37,B38,B39,B4,B42,B43,B45,B49,B59,B60,B67,B68,B70,B76,B77,B78,B84,B9,B99,C14,C15,C18,C24,C3,C34,C35,C39,C40,C42,C44,C47,C49,C5,C52,C56,C63,C64,C66,C71,C73,C81,C82,C87,D10,D3,D7 |
Chr7:18765596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:18765599 |
TC |
T |
1bp_deletion | frameshift_variant | 164 | A10,A11,A13,A15,A16,A21,A22,A24,A4,A5,B1,B10,B100,B102,B103,B104,B107,B108,B109,B11,B110,B111,B113,B114,B115,B118,B119,B120,B122,B123,B124,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B136,B137,B138,B139,B140,B15,B16,B17,B18,B2,B20,B22,B23,B26,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B45,B47,B49,B5,B51,B52,B55,B57,B58,B59,B6,B60,B62,B63,B65,B67,B68,B69,B70,B71,B73,B75,B76,B77,B78,B79,B83,B85,B86,B87,B88,B9,B94,B97,B99,C10,C14,C15,C18,C23,C24,C25,C26,C28,C3,C30,C32,C34,C35,C36,C37,C38,C39,C40,C41,C42,C43,C44,C45,C47,C49,C5,C51,C52,C55,C56,C59,C60,C62,C63,C64,C66,C67,C68,C7,C70,C71,C73,C79,C8,C81,C82,C85,C87,C9,D1,D10,D11,D2,D3,D4,D7,D9 |
Chr7:18765601 |
C |
CT |
1bp_insertion | frameshift_variant | 162 | A10,A11,A13,A15,A16,A21,A22,A24,A4,A5,B1,B10,B100,B102,B103,B104,B107,B108,B109,B11,B110,B111,B113,B114,B115,B118,B119,B120,B122,B123,B124,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B136,B137,B138,B139,B140,B15,B17,B18,B2,B20,B22,B23,B26,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B45,B47,B49,B5,B51,B52,B55,B57,B58,B59,B6,B60,B62,B63,B65,B67,B68,B69,B70,B71,B73,B75,B76,B77,B78,B79,B83,B85,B86,B87,B88,B9,B94,B97,B99,C10,C14,C15,C18,C23,C24,C25,C26,C28,C3,C30,C32,C34,C35,C36,C37,C38,C39,C40,C41,C42,C43,C44,C45,C47,C5,C51,C52,C55,C56,C59,C60,C62,C63,C64,C66,C67,C68,C7,C70,C71,C73,C79,C8,C81,C82,C85,C87,C9,D1,D10,D11,D2,D3,D4,D7,D9 |
Chr7:18765636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:18766722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B99,C46,C83 |
Chr7:18767042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:18767861 |
T |
TC |
1bp_insertion | frameshift_variant | 68 | A1,A23,A3,B10,B106,B117,B121,B125,B126,B139,B14,B20,B21,B26,B35,B38,B39,B4,B41,B42,B43,B44,B5,B52,B57,B58,B74,B75,B78,B80,B82,B86,B91,B93,B95,B98,B99,C12,C15,C17,C18,C2,C20,C21,C27,C30,C33,C37,C39,C4,C41,C46,C47,C55,C63,C65,C72,C74,C75,C76,C77,C83,C84,D10,D11,D3,D5,D6 |
Chr7:18767868 |
CT |
C |
1bp_deletion | frameshift_variant | 68 | A1,A23,A3,B10,B106,B117,B121,B125,B126,B139,B14,B20,B21,B26,B35,B38,B39,B4,B41,B42,B43,B44,B5,B52,B57,B58,B74,B75,B78,B80,B82,B86,B91,B93,B95,B98,B99,C12,C15,C17,C18,C2,C20,C21,C27,C30,C33,C37,C39,C4,C41,C46,C47,C55,C63,C65,C72,C74,C75,C76,C77,C83,C84,D10,D11,D3,D5,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773909.1PF00254
FKBP_C 130-251 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773909.1 |
Pfam | PF00254 |
FKBP_C | Domain | 130 | 251 | 4.6e-10 | 40.4 | FKBP-type peptidyl-prolyl cis-trans isomerase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。