Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002064`

染色体: Chr07 坐标: 18771335-18774148 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002064`
名称	SmilChr07G002064
描述	protein NRT1/ PTR FAMILY 6.1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18771335 - 18774148 / `+`

ID 对照

NCBI Gene ID	`LOC130993144`
GeneID	`130993144`
locus_tag	`-`
NCBI Name	`LOC130993144`
原始查询	`SmilChr07G002064`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NRT1/ PTR FAMILY 6.1
产物	protein NRT1/ PTR FAMILY 6.1
Arabidopsis	`AT5G13400` (AT5G13400) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831181] identity=77.4; qcov=0.987; evalue=0; confidence=high
Rice	`Os01g0103100` (P0455C04.25) - identity=68.4; qcov=0.894; evalue=0; confidence=high
GO	GO:0006857 (oligopeptide transport); GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00854 (PTR2); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:130993144

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057773907.1`
2	Nucleus	细胞核	0.00000	`XP_057773907.1`
3	Chromosome	染色体	0.00000	`XP_057773907.1`
4	Centromere	着丝粒	0.00000	`XP_057773907.1`
5	Chromatin	染色质	0.00000	`XP_057773907.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18772549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr7:18772802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B15,C18
`Chr7:18772900`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B140
`Chr7:18772900`	`TC`	`T`	1bp_deletion	CDS_variant	1	B140
`Chr7:18772933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,C30,D9
`Chr7:18773234`	`T`	`TTA`	2bp_insertion	frameshift_variant	2	B46,C30
`Chr7:18773234`	`T`	`TTA`	2bp_insertion	CDS_variant	2	B46,C30
`Chr7:18773246`	`T`	`TTG`	2bp_insertion	frameshift_variant	10	A3,B103,B109,B22,B43,B44,B53,B6,C63,C67
`Chr7:18773303`	`AC`	`A`	1bp_deletion	frameshift_variant	178	A1,A10,A11,A13,A14,A16,A18,A19,A21,A23,A24,A25,A3,A4,A5,A7,A8,B10,B100,B101,B102,B103,B104,B105,B106,B108,B109,B11,B110,B112,B113,B117,B119,B120,B121,B123,B124,B125,B127,B128,B13,B131,B132,B133,B134,B136,B137,B138,B139,B17,B2,B21,B22,B23,B25,B26,B27,B28,B29,B3,B32,B33,B34,B36,B40,B41,B43,B44,B46,B47,B48,B49,B5,B51,B52,B53,B55,B56,B58,B59,B6,B60,B62,B64,B65,B67,B68,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B81,B82,B84,B85,B88,B89,B90,B92,B94,B95,B96,B98,B99,C1,C11,C12,C15,C16,C17,C19,C20,C21,C22,C24,C26,C28,C29,C3,C30,C31,C33,C34,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C48,C5,C52,C53,C54,C55,C56,C57,C58,C6,C60,C62,C63,C66,C67,C68,C69,C7,C70,C71,C73,C74,C78,C79,C82,C83,C84,C85,C87,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9
`Chr7:18773339`	`C`	`CTT`	2bp_insertion	frameshift_variant	170	A1,A10,A11,A13,A14,A18,A19,A21,A23,A24,A25,A3,A4,A5,A7,A8,B100,B101,B102,B103,B104,B105,B106,B108,B109,B11,B110,B112,B113,B114,B117,B118,B119,B120,B121,B123,B124,B125,B128,B13,B132,B133,B134,B136,B137,B138,B139,B17,B2,B21,B22,B23,B24,B26,B27,B28,B29,B3,B32,B33,B36,B39,B40,B41,B43,B46,B47,B49,B5,B51,B52,B53,B55,B56,B59,B6,B60,B62,B64,B65,B67,B68,B7,B70,B71,B72,B74,B75,B76,B77,B78,B81,B82,B85,B88,B89,B90,B92,B94,B95,B96,B98,B99,C11,C12,C15,C16,C17,C19,C20,C21,C22,C24,C26,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C4,C40,C42,C43,C44,C45,C48,C5,C50,C52,C53,C54,C55,C56,C57,C58,C59,C60,C62,C63,C66,C67,C68,C69,C7,C70,C71,C72,C74,C78,C79,C82,C83,C85,C87,D1,D10,D11,D2,D3,D4,D5,D7,D8,D9
`Chr7:18773426`	`CT`	`C`	1bp_deletion	frameshift_variant	4	B136,B22,B41,D6
`Chr7:18773426`	`CT`	`C`	1bp_deletion	CDS_variant	4	B136,B22,B41,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773907.1

633 aa

316

633

MFS_1

PTR2

PF07690 MFS_1 83-551 aa PF00854 PTR2 133-563 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773907.1`	Pfam	`PF07690`	MFS_1	Family	83	551	6.8e-10	39.1	Major Facilitator Superfamily
`XP_057773907.1`	Pfam	`PF00854`	PTR2	Family	133	563	8.7e-79	265.9	POT family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917924.1
ACTCTTTATTGCATCCATCGTCATACATTTATTACTCTGATTTATATCTGTCATCACTGTGAAAATCGAGCAACTTATATACACCTTTCTGTTGAAATGATTTTCCTAGTATTTCATTCTTACTCAAGATTGATGATATCGAATGAAGTTTAGATTTGAAGTCAATTCAAAATAGTGTGAGACATATGATGATGAAAGTATTTACGCGTACGTTTAGTTTGACGATATGCGCACCTGTAATCATTAGGGGAAGATAGTGG...

CDS

1 records

下载 CDS FASTA

LOC130993144
ATGGCTGCCCGGGAGATCAAGTCACCCGAGCCCCTGCCCGTTACTCCGGCTAGGAGGAAGCGGCTCGGGATGTACTTTCTGGAATCCGACGACAGGCGGACTGCTCTGGGGGGCGGCTACACCGGCGGAGCTACACCGGTGAACATCCACGGGAAGCCACTTTCGGAGCTCAGCGTGTCCAAGACCGGTGGCTGGCTTGCTGCTTTCTTCATTTTCGGGAATGAAATGGCAGAGAGAATGGCTTACTTTGGTTTGTCTGT...

Protein

1 records

下载 Protein FASTA

XP_057773907.1
MAAREIKSPEPLPVTPARRKRLGMYFLESDDRRTALGGGYTGGATPVNIHGKPLSELSVSKTGGWLAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFEGSANAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMTSLMPNQDKCDQIALLLGNCEPAKPWQMLYLYAVLYITAFGAAGIRPCVSSFGADQFDERSRDYKEHLDRFFNFFYLSVTVGAIVAFTAVVYIQIKHGWGSAFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器