Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002096

染色体: Chr07 坐标: 19080554-19083939 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002096
名称SmilChr07G002096
描述uncharacterized SmilChr07G002096
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向19080554 - 19083939 / -

ID 对照

NCBI Gene IDLOC130993176
GeneID130993176
locus_tag-
NCBI NameLOC130993176
原始查询SmilChr07G002096

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述classical AGP protein [Source:NCBI gene (formerly Entrezgene);Acc:831040]; symbol=AT5G11680; hit=AT5G11680; species=arabidopsis; confidence=high
产物classical AGP protein [Source:NCBI gene (formerly Entrezgene);Acc:831040]; symbol=AT5G11680; hit=AT5G11680; species=arabidopsis; confidence=high
ArabidopsisAT5G11680 (AT5G11680)
classical AGP protein [Source:NCBI gene (formerly Entrezgene);Acc:831040]
identity=78.3; qcov=1.02; evalue=4.9e-118; confidence=high
RiceOs09g0512900 (P0450E05.3-1)
-
identity=76.4; qcov=0.985; evalue=1.19e-109; confidence=high
GOGO:0003713 (transcription coactivator activity); GO:0005634 (nucleus); GO:0031490 (chromatin DNA binding); GO:0045893 (positive regulation of DNA-templated transcription)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130993176

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057773936.1
2 Vesicle 囊泡 1.00000 XP_057773936.1
3 Endosome 内体 1.00000 XP_057773936.1
4 Cytoplasm 细胞质 0.80000 XP_057773936.1
5 Cytoplasmic vesicle 细胞质囊泡 0.40000 XP_057773936.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:19080816 G A EMS_canonical_SNV CDS_variant 1 A19
Chr7:19080868 G A EMS_canonical_SNV CDS_variant 4 B10,C41,C65,C74
Chr7:19080922 C T EMS_canonical_SNV CDS_variant 2 A18,C77
Chr7:19080935 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:19080942 GAC G 2bp_deletion frameshift_variant 11 A1,A6,B106,B117,B139,B4,B41,B57,C20,C46,C75
Chr7:19081173 G A EMS_canonical_SNV CDS_variant 1 C60

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057917953.1
AAATTGATATTGAATGCCTGGCTGTAGTCAAGGAAGGAGGAGAGGAAAGGGATGACGGTGGATCTCACCGATTAAACTACATCTGATGACAACCGACTAGAAAGAAATAAATTTACCGTGTAAATTTATATGTGAAAAATGATTAGGTTAGTTAAATATTGAGAAATTGTGGAGAAATTATCATAGGATTGATTGAATTAGCGTAGTCGGTTGGGTTATCTGTTATTGGGCCATCTTTAACAATTAATTTAATTAAAGCC...
XM_057917952.1
TAGTTTGCGACGCCCACGCGTTTTATCGTTAGAGATCATCGCGTATTTGCGTACTCAAAAATTCTTCATAATCTACCCTGCACCCAAAGCTCTTGGAGTTGAATCTAGATACAGAAAGCATGGCTCTGAATCCTCAACTCTTCCCCAATGGGATGCCGGTGCCCTTCATCAACGAGATGTTCGTCTTGGCTAGAGACGGCGTCGAATTTGAGATCGACAAGATCCCCGGCACTCAAGGTGGAACAGTTAAAGCAAAAGGA...

CDS

2 records

下载 CDS FASTA
LOC130993176
ATGGCTCTGAATCCTCAACTCTTCCCCAATGGGATGCCGGTGCCCTTCATCAACGAGATGTTCGTCTTGGCTAGAGACGGCGTCGAATTTGAGATCGACAAGATCCCCGGCACTCAAGGTGGAACAGTTAAAGCAAAAGGAACTATTTACTTGTCAAATATCCGCATGGTGTTCGTTGCAAAGAAACCTGTTGGGAATCTTTTTGCTTTTGATATGCCCCTGCTCCATGTTCATGATGAGAAATTCCACCAGCCAATTTT...
LOC130993176
ATGGCTCTGAATCCTCAACTCTTCCCCAATGGGATGCCGGTGCCCTTCATCAACGAGATGTTCGTCTTGGCTAGAGACGGCGTCGAATTTGAGATCGACAAGATCCCCGGCACTCAAGGTGGAACAGTTAAAGCAAAAGGAACTATTTACTTGTCAAATATCCGCATGGTGTTCGTTGCAAAGAAACCTGTTGGGAATCTTTTTGCTTTTGATATGCCCCTGCTCCATGTTCATGATGAGAAATTCCACCAGCCAATTTT...

Protein

2 records

下载 Protein FASTA
XP_057773935.1
MALNPQLFPNGMPVPFINEMFVLARDGVEFEIDKIPGTQGGTVKAKGTIYLSNIRMVFVAKKPVGNLFAFDMPLLHVHDEKFHQPIFYCNNIAGRVEPVVPDNEHRALYSTHSFKILFKDGGCGTFVPLFFNLISSVRQYNQHLAAQPRVDPLQAAQTPVDEMMRHAYVFFLLHTIAVFAVFTSCSANERRNCMYVADTLILATPLEFSCSSRTQSHS
XP_057773936.1
MALNPQLFPNGMPVPFINEMFVLARDGVEFEIDKIPGTQGGTVKAKGTIYLSNIRMVFVAKKPVGNLFAFDMPLLHVHDEKFHQPIFYCNNIAGRVEPVVPDNEHRALYSTHSFKILFKDGGCGTFVPLFFNLISSVRQYNQHLAAQPRVDPLQAAQTPVDEMMRHAYVDPSDPTRIFLQQPNAESQLRRRTYQPNNTENPM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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