当前解析结果
SmilChr07G002096| 统一新 Gene ID | SmilChr07G002096 |
|---|---|
| 名称 | SmilChr07G002096 |
| 描述 | uncharacterized SmilChr07G002096 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 19080554 - 19083939 / - |
| NCBI Gene ID | LOC130993176 |
|---|---|
| GeneID | 130993176 |
| locus_tag | - |
| NCBI Name | LOC130993176 |
| 原始查询 | SmilChr07G002096 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | classical AGP protein [Source:NCBI gene (formerly Entrezgene);Acc:831040]; symbol=AT5G11680; hit=AT5G11680; species=arabidopsis; confidence=high |
| 产物 | classical AGP protein [Source:NCBI gene (formerly Entrezgene);Acc:831040]; symbol=AT5G11680; hit=AT5G11680; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G11680 (AT5G11680)classical AGP protein [Source:NCBI gene (formerly Entrezgene);Acc:831040] identity=78.3; qcov=1.02; evalue=4.9e-118; confidence=high |
| Rice | Os09g0512900 (P0450E05.3-1)- identity=76.4; qcov=0.985; evalue=1.19e-109; confidence=high |
| GO | GO:0003713 (transcription coactivator activity); GO:0005634 (nucleus); GO:0031490 (chromatin DNA binding); GO:0045893 (positive regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993176 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057773936.1 |
| 2 | Vesicle | 囊泡 | 1.00000 | XP_057773936.1 |
| 3 | Endosome | 内体 | 1.00000 | XP_057773936.1 |
| 4 | Cytoplasm | 细胞质 | 0.80000 | XP_057773936.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057773936.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:19080816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:19080868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,C41,C65,C74 |
Chr7:19080922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,C77 |
Chr7:19080935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:19080942 |
GAC |
G |
2bp_deletion | frameshift_variant | 11 | A1,A6,B106,B117,B139,B4,B41,B57,C20,C46,C75 |
Chr7:19081173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。