Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002101`

染色体: Chr07 坐标: 19111360-19114349 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002101`
名称	SmilChr07G002101
描述	uncharacterized SmilChr07G002101
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19111360 - 19114349 / `-`

ID 对照

NCBI Gene ID	`LOC130993181`
GeneID	`130993181`
locus_tag	`-`
NCBI Name	`LOC130993181`
原始查询	`SmilChr07G002101`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=35.5; qcov=0.846; evalue=2.31e-66; confidence=medium
Rice	`Os08g0106900` - identity=39; qcov=0.968; evalue=1.45e-86; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:130993181

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773942.1`
2	Chromosome	染色体	0.40000	`XP_057773942.1`
3	Telomere	端粒	0.20000	`XP_057773942.1`
4	Centromere	着丝粒	0.00000	`XP_057773942.1`
5	Chromatin	染色质	0.00000	`XP_057773942.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19111487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,B65
`Chr7:19111511`	`CA`	`C`	1bp_deletion	frameshift_variant	4	B16,B29,B65,C40
`Chr7:19111511`	`CA`	`C`	1bp_deletion	CDS_variant	4	B16,B29,B65,C40
`Chr7:19111526`	`AGC`	`A`	2bp_deletion	frameshift_variant	3	B16,B29,B65
`Chr7:19111526`	`AGC`	`A`	2bp_deletion	CDS_variant	3	B16,B29,B65
`Chr7:19111529`	`A`	`AAG`	2bp_insertion	frameshift_variant	3	B16,B29,B65
`Chr7:19111529`	`A`	`AAG`	2bp_insertion	CDS_variant	3	B16,B29,B65
`Chr7:19111540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B16,B65
`Chr7:19111541`	`ATC`	`A`	2bp_deletion	frameshift_variant	26	A1,A16,B113,B139,B30,B38,B39,B48,B56,B57,B73,B75,B88,B96,C19,C24,C32,C34,C41,C55,C57,C68,C7,C79,C82,D7
`Chr7:19111544`	`A`	`AAT`	2bp_insertion	frameshift_variant	26	A1,A16,B113,B139,B30,B38,B39,B48,B56,B57,B73,B75,B88,B96,C19,C24,C32,C34,C41,C55,C57,C68,C7,C79,C82,D7
`Chr7:19111565`	`ACT`	`A`	2bp_deletion	frameshift_variant	77	A10,A13,A14,A2,A21,A23,A6,A7,B10,B102,B103,B106,B107,B108,B110,B118,B128,B13,B130,B131,B132,B133,B134,B137,B17,B19,B2,B34,B4,B47,B50,B57,B61,B64,B65,B66,B72,B8,B80,B84,B85,B87,B90,B91,B94,B97,B98,C11,C2,C21,C24,C28,C29,C3,C31,C32,C39,C40,C45,C46,C5,C50,C56,C58,C63,C64,C71,C74,C8,C80,C81,C83,C84,D10,D2,D3,D5
`Chr7:19111568`	`A`	`AAG`	2bp_insertion	frameshift_variant	78	A10,A13,A14,A2,A21,A23,A6,A7,B10,B102,B103,B105,B106,B107,B108,B110,B118,B128,B13,B130,B131,B132,B133,B134,B137,B17,B19,B2,B34,B4,B47,B50,B57,B61,B64,B65,B66,B72,B8,B80,B84,B85,B87,B90,B91,B94,B97,B98,C11,C2,C21,C24,C28,C29,C3,C31,C32,C39,C40,C45,C46,C5,C50,C56,C58,C63,C64,C71,C74,C8,C80,C81,C83,C84,D10,D2,D3,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773942.1

403 aa

202

403

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-150 aa PF04827 Plant_tran 172-344 aa PF01609 DDE_Tnp_1 174-341 aa PF13359 DDE_Tnp_4 181-342 aa

XP_057773943.1

403 aa

202

403

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-150 aa PF04827 Plant_tran 172-344 aa PF01609 DDE_Tnp_1 174-341 aa PF13359 DDE_Tnp_4 181-342 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773942.1`	Pfam	`PF26138`	DUF8040	Domain	66	150	9.1e-22	77.5	Domain of unknown function (DUF8040)
`XP_057773942.1`	Pfam	`PF04827`	Plant_tran	Family	172	344	2.9e-06	27.8	Plant transposon protein
`XP_057773942.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	174	341	9.2e-10	39.3	Transposase DDE domain
`XP_057773942.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	1.7e-24	86.9	DDE superfamily endonuclease
`XP_057773943.1`	Pfam	`PF26138`	DUF8040	Domain	66	150	9.1e-22	77.5	Domain of unknown function (DUF8040)
`XP_057773943.1`	Pfam	`PF04827`	Plant_tran	Family	172	344	2.9e-06	27.8	Plant transposon protein
`XP_057773943.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	174	341	9.2e-10	39.3	Transposase DDE domain
`XP_057773943.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	181	342	1.7e-24	86.9	DDE superfamily endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917959.1
TCTTAAGTAATAGTCCAGGCCCGCACCAAAATGAAAGCCCGCATCAAATTCACTGTTCTTCTGCAAAAATACAACCACCGCTCACCCCCAAATGAATAATCTCGTTTTGAACAGTGAGGTGATATTAGATGTTCCAGTTACAATTTTATCCCTCAAATTACTTCAAAATCGGAGCCTCCATCAAATCCCGCCATATTTCGCTGCCTTTTTCACGCAAAGAAGAGGAGTTCTTCAGTGGTTGAATTGATATTTTCGGCAGA...

XM_057917960.1
TCTTAAGTAATAGTCCAGGCCCGCACCAAAATGAAAGCCCGCATCAAATTCACTGTTCTTCTGCAAAAATACAACCACCGCTCACCCCCAAATGAATAATCTCGTTTTGAACAGTGAGGTGATATTAGATGTTCCAGTTACAATTTTATCCCTCAAATTACTTCAAAATCGGAGCCTCCATCAAATCCCGCCATATTTCGCTGCCTTTTTCACGCAAAGAAGAGGAGTTCTTCAGTGGTTGAATTGATATTTTCGGCAGA...

CDS

2 records

下载 CDS FASTA

LOC130993181
ATGCCGACTGATGACGTTAATATAGTGTGTATATACCTGTTGATGGAAGAGATTTTCCTAGAAAATCTCATTCTCATACTGGTAGCTTATCATATTATGGTTAGGATGAGATCACGTAAACGAAGAAGAAATACTAATGCAGCAGTTTTTGGGTACATTGAACGAATTCCTGATCAAGCTTTCCATATGAATAGGCTCGTATGTGTTAGCGATGTAGATTGTGTAGCAAACTTACGCATGGACCGCAACACATTCGGTAG...

Protein

2 records

下载 Protein FASTA

XP_057773942.1
MPTDDVNIVCIYLLMEEIFLENLILILVAYHIMVRMRSRKRRRNTNAAVFGYIERIPDQAFHMNRLVCVSDVDCVANLRMDRNTFGRLCLLLRDLGGLSDGRYIRVEEQVAIFLSILAHHKKNRVVRFDFWRSGQTVSKFVHLVLRAILKLHTVLLVKPVPVPDDCTDNRWRWFKGCLGALDGTYINVLVSNADKPRYRTRKGQISTNTLAVCDRSMKFVYVLPGWEGSAADSRILRNALTRVNGLRVPKGSYYLCDNGY...

XP_057773943.1
MPTDDVNIVCIYLLMEEIFLENLILILVAYHIMVRMRSRKRRRNTNAAVFGYIERIPDQAFHMNRLVCVSDVDCVANLRMDRNTFGRLCLLLRDLGGLSDGRYIRVEEQVAIFLSILAHHKKNRVVRFDFWRSGQTVSKFVHLVLRAILKLHTVLLVKPVPVPDDCTDNRWRWFKGCLGALDGTYINVLVSNADKPRYRTRKGQISTNTLAVCDRSMKFVYVLPGWEGSAADSRILRNALTRVNGLRVPKGSYYLCDNGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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