Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002116`

染色体: Chr07 坐标: 19267952-19273337 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002116`
名称	SmilChr07G002116
描述	uncharacterized SmilChr07G002116
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19267952 - 19273337 / `+`

ID 对照

NCBI Gene ID	`LOC130993198`
GeneID	`130993198`
locus_tag	`-`
NCBI Name	`LOC130993198`
原始查询	`SmilChr07G002116`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829493]; symbol=AT4G33540; hit=AT4G33540; species=arabidopsis; confidence=high
产物	metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829493]; symbol=AT4G33540; hit=AT4G33540; species=arabidopsis; confidence=high
Arabidopsis	`AT4G33540` (AT4G33540) metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829493] identity=54; qcov=1.02; evalue=1.66e-115; confidence=high
Rice	`Os02g0829600` (OJ1124_D06.12-1) - identity=54.4; qcov=0.979; evalue=4.9e-111; confidence=high
GO	-
KEGG	-
Pfam	PF00753 (Lactamase_B); PF13370 (Fer4_13)
InterPro	-
eggNOG	-
NR	GeneID:130993198

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773967.1`
2	Mitochondrion	线粒体	0.80000	`XP_057773967.1`
3	Cytosol	细胞质基质	0.60000	`XP_057773968.1`
4	Peroxisome	过氧化物酶体	0.40000	`XP_057773968.1`
5	Mitochondrion matrix	线粒体基质	0.20000	`XP_057773967.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19268211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr7:19268295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:19268298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr7:19268674`	`CT`	`C`	1bp_deletion	frameshift_variant	13	A5,B117,B123,B72,B8,B93,C12,C58,C62,C7,C76,D1,D6
`Chr7:19268679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,C83
`Chr7:19269696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B101,C5,D11,D7
`Chr7:19271260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:19271606`	`C`	`CA`	1bp_insertion	frameshift_variant	3	B44,C12,C6
`Chr7:19271606`	`C`	`CA`	1bp_insertion	CDS_variant	3	B44,C12,C6
`Chr7:19271960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C45
`Chr7:19272002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B42,B49,B76,C24
`Chr7:19272548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773967.1

318 aa

159

318

Fer4_13

Lactamase_B

PF13370 Fer4_13 41-95 aa PF00753 Lactamase_B 221-291 aa

XP_057773968.1

291 aa

146

291

Lactamase_B

PF00753 Lactamase_B 195-264 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773967.1`	Pfam	`PF13370`	Fer4_13	Domain	41	95	2.3e-21	76.9	4Fe-4S single cluster domain of Ferredoxin I
`XP_057773967.1`	Pfam	`PF00753`	Lactamase_B	Domain	221	291	5.6e-12	46.7	Metallo-beta-lactamase superfamily
`XP_057773968.1`	Pfam	`PF00753`	Lactamase_B	Domain	195	264	4.2e-12	47.1	Metallo-beta-lactamase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917984.1
TATTCATATTATAGTTGTAATTTTTTTGAGACCAACCATATCATAAATTTTAAATACATGTAATCATATTCGTGGATTTTAGATAATCTCAAAATTACTAATATTTTGAAGAAAATCAATGGCGGTTTAGAAAGAAGAGGATGAAGCAAAACAGTTAACCTTCCATCCGTCCCACTCCCACAACAGCTCGAGCTTGCAATTTCGCTTATCGTTTAATTTGTTCTGTGAAAATGGCGGCGGCGGCGGCGGCGGGACTGACG...

XM_057917985.1
ATATCATAAATTTTAAATACATGTAATCATATTCGTGGATTTTAGATAATCTCAAAATTACTAATATTTTGAAGAAAATCAATGGCGGTTTAGAAAGAAGAGGATGAAGCAAAACAGTTAACCTTCCATCCGTCCCACTCCCACAACAGCTCGAGCTTGCAATTTCGCTTATCGTTTAATTTGTTCTGTGAAAATGGCGGCGGCGGCGGCGGCGGGACTGACGTCTTCGATTTTGCGCATCAAAGCTTCGTCCAGCACTT...

CDS

2 records

下载 CDS FASTA

LOC130993198
ATGGCGGCGGCGGCGGCGGCGGGACTGACGTCTTCGATTTTGCGCATCAAAGCTTCGTCCAGCACTTACACCAAGAGTAGGAGAGTTCGACGCCCGCAAAATGTCGACGGAGACTTGTTCGTCGATAACACATGCATAGACTGTGACACTTGTCGTTGGATGGCTCCGGAAATATTCAATAGACAGGATGGCATGTCTGCAGTACTTAAACAGCCGGCATGCCATGAAGAGAGAATCAGAGCTCTTCAGGCATTACTTTC...

LOC130993198
ATGGCGGCGGCGGCGGCGGCGGGACTGACGTCTTCGATTTTGCGCATCAAAGCTTCGTCCAGCACTTACACCAAGAGTAGGAGAGTTCGACGCCCGCAAAATGTCGACGGAGACTTGTTCGTCGATAACACATGCATAGACTGTGACACTTGTCGTTGGATGGCTCCGGCATTACTTTCGTGTCCGACCAACTCAATCCACACAGAACAGCCTCCTCGTGATATTTTAGCAGTTCATAAAACATTCCCGATTCCAATCGA...

Protein

2 records

下载 Protein FASTA

XP_057773967.1
MAAAAAAGLTSSILRIKASSSTYTKSRRVRRPQNVDGDLFVDNTCIDCDTCRWMAPEIFNRQDGMSAVLKQPACHEERIRALQALLSCPTNSIHTEQPPRDILAVHKTFPIPIDEHKIQGVYHCGYHSDKSYGATSYFIERPEGNILIDSPRYTERLSSNIKKMGGVRFMFLTHKDDVADHDKWSKELGCSRILHSEEVCDSTADVEIKLEGNGPWTLGSDITLIHTPGHTKGSVCLLDRTRKVLFTGDHLLMDEFGWSI...

XP_057773968.1
MAAAAAAGLTSSILRIKASSSTYTKSRRVRRPQNVDGDLFVDNTCIDCDTCRWMAPALLSCPTNSIHTEQPPRDILAVHKTFPIPIDEHKIQGVYHCGYHSDKSYGATSYFIERPEGNILIDSPRYTERLSSNIKKMGGVRFMFLTHKDDVADHDKWSKELGCSRILHSEEVCDSTADVEIKLEGNGPWTLGSDITLIHTPGHTKGSVCLLDRTRKVLFTGDHLLMDEFGWSIIEQYNWFSVSEQLKSVQKLLELDFEWI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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